BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG05FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1548 0.0
>3x_Contig1669
Length = 15503
Score = 1548 bits (781), Expect = 0.0
Identities = 850/867 (98%), Gaps = 6/867 (0%)
Strand = Plus / Minus
Query: 91 acgctatcagaattgttcccagattggacaaatgatgatttaattgatttagtccgtgaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6026 acgctatcagaattgttcccagattggacaaatgatgatttaattgatttagtccgtgaa 5967
Query: 151 tatgatgatctagaaaccatagttgataagataactactggagcagtgacaaaatgggac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5966 tatgatgatctagaaaccatagttgataagataactactggagcagtgacaaaatgggac 5907
Query: 211 gaagtgaagaaaccatctaaaaaggaaaagcctgcatcgcatatagaacaccaatctcat 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5906 gaagtgaagaaaccatctaaaaaggaaaagcctgcatcgcatatagaacaccaatctcat 5847
Query: 271 agttctcatcaacagctgcaacaacaagccgcatcacacctggaccctgaagattctcct 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5846 agttctcatcaacagctgcaacaacaagccgcatcacacctggaccctgaagattctcct 5787
Query: 331 tctctaataaatcaacatcattcgcatcaaagacaatctagatccacctctaagttcagt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5786 tctctaataaatcaacatcattcgcatcaaagacaatctagatccacctctaagttcagt 5727
Query: 391 aataacagcgccaatggcaaatcagtgcaacaaagacagcaacaccagtcaaataataaa 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5726 aataacagcgccaatggcaaatcagtgcaacaaagacagcaacaccagtcaaataataaa 5667
Query: 451 gataacaagaagcagccttcaaaggatagtttgaagcctgctccattaccatctaaatct 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5666 gataacaagaagcagccttcaaaggatagtttgaagcctgctccattaccatctaaatct 5607
Query: 511 aacgctggtaataacgcggggtcttgggccgccgtattggcagaaaagaaaaaggctcat 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5606 aacgctggtaataacgcggggtcttgggccgccgtattggcagaaaagaaaaaggctcat 5547
Query: 571 gaaaagaagattgaccatacaaagtcgtctaatacaattgcacatgaatctactaatgaa 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5546 gaaaagaagattgaccatacaaagtcgtctaatacaattgcacatgaatctactaatgaa 5487
Query: 631 caatctgaatctaatgaacataccgaaccaactgaagttgaagttgcacctgcccagcct 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5486 caatctgaatctaatgaacataccgaaccaactgaagttgaagttgcacctgcccagcct 5427
Query: 691 gttgactctgcaccagaatctgtcagccatcaacatgcgccagaatctgaatcaatcgcc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5426 gttgactctgcaccagaatctgtcagccatcaacatgcgccagaatctgaatcaatcgcc 5367
Query: 751 accacaaacggtgattctaagccaaagagttgggctgacatttgcagcgcaaagagcagn 810
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5366 accacaaacggtgattctaagccaaagagttgggctgacattgcaagcgcaaagagcaga 5307
Query: 811 nacaagac-actacagcaacagaacaagaagnncacaacagc-acanaaatcttagccat 868
| ||||| |||||||||||||||||||||| |||||||| ||| |||||| ||||||
Sbjct: 5306 ca-aagacaactacagcaacagaacaagaagca-acaacagcaacaaaaatctaagccat 5249
Query: 869 tggacaactttgatgctttgaaggaagaagntgatcagttgtcttcttgagc-aacggag 927
|||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct: 5248 tggacaactttgatgctttgaaggaagaagttgatcagttgtcttc-tgagcaaacggag 5190
Query: 928 aatgggaaccacgctatttctcaagaa 954
||||| |||||||||||||||||||||
Sbjct: 5189 aatggaaaccacgctatttctcaagaa 5163
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6973
Number of Sequences: 1807
Number of extensions: 6973
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)