BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG05RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1435 1641 0.0
>3x_Contig1435
Length = 8899
Score = 1641 bits (828), Expect = 0.0
Identities = 849/855 (99%), Gaps = 1/855 (0%)
Strand = Plus / Minus
Query: 46 tgaagtgaggtatgcctattttctctgtacccatctgatgcttgctaagaaagaatatcg 105
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 5808 tgaagtgaggtatgcctagtatctctgtacccatctgatgcttgctaagaaagaatatcg 5749
Query: 106 acagataagttctctacgaaatgtcacagttattactaaattttcgaaatcatgcacgac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5748 acagataagttctctacgaaatgtcacagttattactaaattttcgaaatcatgcacgac 5689
Query: 166 aaaagtgatatccataaaacaagtcaattccttaatgatgtgattatattgcattattgc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5688 aaaagtgatatccataaaacaagtcaattccttaatgatgtgattatattgcattattgc 5629
Query: 226 attttataatccaatcattcgtgcctctagtaccctgtgataataataaagtcttatttt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5628 attttataatccaatcattcgtgcctctagtaccctgtgataataataaagtcttatttt 5569
Query: 286 tactaacaatttatcctccgtattttcattacagatcgaagtcgctggtggtaagaaagc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5568 tactaacaatttatcctccgtattttcattacagatcgaagtcgctggtggtaagaaagc 5509
Query: 346 tttggctgtctttgttccagtcccatctttggctgcctaccacaaggtccaaatcaagtt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5508 tttggctgtctttgttccagtcccatctttggctgcctaccacaaggtccaaatcaagtt 5449
Query: 406 gaccagagaattggaaaagaagttccaagaccgtcatgtcatcttcttggctgaaagaag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5448 gaccagagaattggaaaagaagttccaagaccgtcatgtcatcttcttggctgaaagaag 5389
Query: 466 aatcttgccaaagccatctagaaaatccagacaaactcaaaagagaccaagatccagaac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5388 aatcttgccaaagccatctagaaaatccagacaaactcaaaagagaccaagatccagaac 5329
Query: 526 cttgactgctgttcacgataagatcttggaagatttggttttcccaactgaaatcgttgg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5328 cttgactgctgttcacgataagatcttggaagatttggttttcccaactgaaatcgttgg 5269
Query: 586 taagagagtcagatacttggttggtggtaacaagatccaaaagatcttgttgaactccaa 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268 taagagagtcagatacttggttggtggtaacaagatccaaaagatcttgttgaactccaa 5209
Query: 646 ggacgtccaacacatcgacaacaagttggaatctttccaagccgtctacaacaaattgac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5208 ggacgtccaacacatcgacaacaagttggaatctttccaagccgtctacaacaaattgac 5149
Query: 706 cggtaagcaaattgttttcgaaatcccaagcgaaacccactaaatcagttgatagtttat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 cggtaagcaaattgttttcgaaatcccaagcgaaacccactaaatcagttgatagtttat 5089
Query: 766 tttgtcaataatcatctattaatctaaaagaaatttaagttttattttcataaactcgta 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5088 tttgtcaataatcatctattaatctaaaagaaatttaagttttattttcataaactcgta 5029
Query: 826 cttctggtactgtttctattgtattctagnngtgaattctactcatttgagcttgaaatg 885
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 5028 cttctggtactgtttctattgtattctag-tgtgagttctactcatttgagcttgaaatg 4970
Query: 886 attatcttatataaa 900
|| ||||||||||||
Sbjct: 4969 ataatcttatataaa 4955
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8034
Number of Sequences: 1807
Number of extensions: 8034
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)