BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG06RM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig605 809 0.0
>3x_Contig605
Length = 2275
Score = 809 bits (408), Expect = 0.0
Identities = 478/495 (96%), Gaps = 6/495 (1%)
Strand = Plus / Minus
Query: 47 ttgataggtgtcgacgttgttggtacgaatagcgatttaatcgttcttgaccccactaga 106
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1037 ttgataggtgtcgacgttggtggtacgaatagcgatttagtcgttcttgaccccactaga 978
Query: 107 ctggggcaccccgatagaggggtattggcgtggcacaaatcagtgaccactcctgacgta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 ctggggcaccccgatagaggggtattggcgtggcacaaatcagtgaccactcctgacgta 918
Query: 167 tctgttgggatccaagctgctattaagactatcctagaaaatccaaacaaccatattgaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 tctgttgggatccaagctgctattaagactatcctagaaaatccaaacaaccatattgaa 858
Query: 227 aagtcagaaatcgtttctgtcacaatcggtactactcatttcataaatgccgtcattgaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aagtcagaaatcgtttctgtcacaatcggtactactcatttcataaatgccgtcattgaa 798
Query: 287 cgtgattcgagcagattggaaaaggttgcagtcatcagattgtccggtccctatggtaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cgtgattcgagcagattggaaaaggttgcagtcatcagattgtccggtccctatggtaga 738
Query: 347 catatgcccccatttggcgattttcctgaggatttggccgagatcatcaatggatattac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 catatgcccccatttggcgattttcctgaggatttggccgagatcatcaatggatattac 678
Query: 407 tgtactcttgacggtggtttgtagagtggaatgtaaaggatttaaagccttttgattaaa 466
||||||||||||||||| ||||||||||| ||| |||||| | |||||||| ||| ||
Sbjct: 677 tgtactcttgacggtgg-ttgtagagtgg-atggtaaggatatcaagcctttggatgaag 620
Query: 467 aaccggtttgagaaaagaatgtgctaatattaaaacattgggtttaacttgcagtggcgg 526
| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 619 a--cggtttgagaaaagaatgtgctaatatcaaaacattgggtataac-tgcagtggc-g 564
Query: 527 gttgttgccacattt 541
|||||||||||||||
Sbjct: 563 gttgttgccacattt 549
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,567
Number of Sequences: 1807
Number of extensions: 13567
Number of successful extensions: 135
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)