BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG07FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1526 0.0
>3x_Contig1668
Length = 13429
Score = 1526 bits (770), Expect = 0.0
Identities = 831/848 (97%), Gaps = 3/848 (0%)
Strand = Plus / Minus
Query: 88 cttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaagtgctgttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8004 cttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaagtgctgttg 7945
Query: 148 cagctccaggttactccagcacttggtctactgccgcaagtttatctactggaggtaata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7944 cagctccaggttactccagcacttggtctactgccgcaagtttatctactggaggtaata 7885
Query: 208 tcttcacagttaccaacaatgctaatggtactgtttcgactggtacaggatcttcaggct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7884 tcttcacagttaccaacaatgctaatggtactgtttcgactggtacaggatcttcaggct 7825
Query: 268 ccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttcaaaaaaag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7824 ccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttcaaaaaaag 7765
Query: 328 aaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtctacttctaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7764 aaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtctacttctaa 7705
Query: 388 gtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaataaaagcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7704 gtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaataaaagcaa 7645
Query: 448 aagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatcagaggaact 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7644 aagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatcagaggaact 7585
Query: 508 tcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgtcttaattt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7584 tcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgtcttaattt 7525
Query: 568 agcacattttcggttctttgtcagatcaaagattctattgccaatagaaaccctttcact 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7524 agcacattttcggttctttgtcagatcaaagattctattgccaatagaaaccctttcact 7465
Query: 628 gcccaaaaattgatgcgttgctcgatctccgttccacttgcatatgaacagaaagcctat 687
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7464 gcccaaaaattgatgcgttgctcgatctccgttccacttgcataggaacagaaagcctat 7405
Query: 688 tatcagaatttctttttacacccttagttaattcaatttctcacataagcatactctcta 747
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7404 aatcagaatttcttttaacaccc-tagttaattcaatttctcacataagcatactctcta 7346
Query: 748 tcaagaatattgntcaacttaccctcggactatttcgacaggtcgagcattttatattga 807
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7345 tcaagaatattgttcaacttaccctcgaactatttcgacaggtcgagcattttatattga 7286
Query: 808 tcaattgatttccgatatttgttttgagtgaacaaaaatccc-accaagagacggacact 866
|||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 7285 tcaattga-ttccgataatttgtttgagtgaacaaaaatcccaaccaagagacggacact 7227
Query: 867 atctttaattaactccatcagncccttgtccagccaatatttacagttctatgtatctct 926
||||| | | ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7226 atcttaattaaactcaatcagccccttgtccagccaatatttacagttctatgtatctct 7167
Query: 927 ttttagaa 934
||| ||||
Sbjct: 7166 tttaagaa 7159
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7792
Number of Sequences: 1807
Number of extensions: 7792
Number of successful extensions: 134
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)