BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG07RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1267 1372 0.0
>3x_Contig1267
Length = 5986
Score = 1372 bits (692), Expect = 0.0
Identities = 748/758 (98%), Gaps = 8/758 (1%)
Strand = Plus / Plus
Query: 45 cacctttttcgattcttgttttctgcctggtaagaacccatgatcatcatacctagcagc 104
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3282 cacctttttcgattcttgttctctgcctggtaagaacccatgatcatcatacctagcagc 3341
Query: 105 agttaagttctcatattcgaaaccatcctcgtaatctgaccattcgtccatattcatatc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3342 agttaagttctcatattcgaaaccatcctcgtaatctgaccattcgtccatattcatatc 3401
Query: 165 ttgagctgcgtattcttccaagatatcacgttcttctgatggcaaaaattccgtgccttc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3402 ttgagctgcgtattcttccaagatatcacgttcttctgatggcaaaaattccgtgccttc 3461
Query: 225 ttctgtagacttatttcttctcgctgaggctgccaatttctctattttggagacttggaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3462 ttctgtagacttatttcttctcgctgaggctgccaatttctctattttggagacttggaa 3521
Query: 285 atcccccattcctggtatgtgaatgagtctatcaatgttaaagcctgccccacgcactat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3522 atcccccattcctggtatgtgaatgagtctatcaatgttaaagcctgccccacgcactat 3581
Query: 345 accttgtaccactagatgtcctctgttttcagagctttctatgaaatctatgttgtcggc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3582 accttgtaccactagatgtcctctgttttcagagctttctatgaaatctatgttgtcggc 3641
Query: 405 gagtaagtatcccctagcatctctccacttgacagtacgaggatacttttgacataatgt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3642 gagtaagtatcccctagcatctctccacttgacagtacgaggatacttttgacataatgt 3701
Query: 465 tctgatggcattgatagcttcggatggtttctccaagttataaacagatttttcgttagg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3702 tctgatggcattgatagcttcggatggtttctccaagttataaacagatttttcgttagg 3761
Query: 525 gaagaaatgtgtaaagtaactctctaatgatttcttaacatctagttggaacttttcctt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3762 gaagaaatgtgtaaagtaactctctaatgatttcttaacatctagttggaacttttcctt 3821
Query: 585 tggatgtacttgtgaaagattcgagactacaccgaggtaggaggaaataccttggaattc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 tggatgtacttgtgaaagattcgagactacaccgaggtaggaggaaataccttggaattc 3881
Query: 645 tagagatctaataatttgttcaccgaattcaccatccacctcagatgtaccactttaacc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3882 tagagatctaataatttgttcaccgaattcaccatccacctcagatgtaccac-ttaacc 3940
Query: 705 caanaacgacgaaatctgccactttttagcacagtctaaaatggttgatgaaaattggac 764
||| |||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 3941 caaaaacgacgaaatctgccac--tttagcacagtctaaaat-gttgatg-aaattggac 3996
Query: 765 atattctggaaataatcactttgaagagtagttttaaa 802
||| ||||| ||||||||| ||||||||||||||||||
Sbjct: 3997 ata-tctgg-aataatcac-ttgaagagtagttttaaa 4031
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6581
Number of Sequences: 1807
Number of extensions: 6581
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)