BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG09FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig441 1437 0.0
>3x_Contig441
Length = 2196
Score = 1437 bits (725), Expect = 0.0
Identities = 738/740 (99%), Gaps = 1/740 (0%)
Strand = Plus / Plus
Query: 87 ttcaagaatttggcagttctggccttctttggagctatgatggtattagtgaaagattca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1452 ttcaagaatttggcagttctggccttctttggagctatgatggtattagtgaaagattca 1511
Query: 147 atctctggagttattatcactccaattttgctcaaaattaaaatgtctaaattagataaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 atctctggagttattatcactccaattttgctcaaaattaaaatgtctaaattagataaa 1571
Query: 207 ttctcatggcagttgtttaacactgcctttatcttgtatggtttatgcgatatattcaag 266
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 ttctcatggcagttggttaacactgcctttatcttgtatggtttatgcgatatattcaag 1631
Query: 267 taagaaaccatttcgtctgcctttgaatctagagctttctgcttctttatctcctgaatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 taagaaaccatttcgtctgcctttgaatctagagctttctgcttctttatctcctgaatc 1691
Query: 327 gcctccgggagtaattctggggatcttttacgtttattgatcttctggaactcgtttaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 gcctccgggagtaattctggggatcttttacgtttattgatcttctggaactcgtttaat 1751
Query: 387 gactctatatcctcgtgtaatttttctgccgcttttgccttcgctcttctcctggtgtca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 gactctatatcctcgtgtaatttttctgccgcttttgccttcgctcttctcctggtgtca 1811
Query: 447 ctcattggggttaatggctgagatgggttttcgaggctctcagcagcagataaagatgat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1812 ctcattggggttaatggctgagatgggttttcgaggctctcagcagcagataaagatgat 1871
Query: 507 aactcccttgatgttattggtgtagcaatactgcctttatcattttttgattctatagtt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1872 aactcccttgatgttattggtgtagcaatactgcctttatcattttttgattctatagtt 1931
Query: 567 ccattctcttgatgtacagacatttccggtgattccacaggtgtactttcttttgcctct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 ccattctcttgatgtacagacatttccggtgattccacaggtgtactttcttttgcctct 1991
Query: 627 tcttgtaactctttaggaaatttagttaatgatgtatcattattagaagatttgggaacc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1992 tcttgtaactctttaggaaatttagttaatgatgtatcattattagaagatttgggaacc 2051
Query: 687 tgcgtcacatctccttgctcatcttctggagcattggttaatgacacgtcgtggttagat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 tgcgtcacatctccttgctcatcttctggagcattggttaatgacacgtcgtggttagat 2111
Query: 747 gatttagaggtttgagtcanatgttcttccgctgctggtgtggtaggcattgaaatggga 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 gatttagaggtttgagtcanatgttcttccgctgctggtgtggtaggcattgaaatggga 2171
Query: 807 tgtttctttgttcagctgtt 826
|| |||||||||||||||||
Sbjct: 2172 tg-ttctttgttcagctgtt 2190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7310
Number of Sequences: 1807
Number of extensions: 7310
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)