BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG09RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1620 0.0
>3x_Contig1250
Length = 5563
Score = 1620 bits (817), Expect = 0.0
Identities = 870/884 (98%), Gaps = 4/884 (0%)
Strand = Plus / Plus
Query: 48 cagtattaatctcgattttt--gccattcgaaagcgagtcgatgaaaaggttgatgcaag 105
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4026 cagtattaatctcgatattttcgccattcgaaagcgagtcgatgaaaaggttgatgcaag 4085
Query: 106 agttaagagtttccttttctatcttagtgaatgaccagatcttgatcaaaaccaacgcag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4086 agttaagagtttccttttctatcttagtgaatgaccagatcttgatcaaaaccaacgcag 4145
Query: 166 tcagtactttatacttctcgaccttaaatgattgttgtaacgtcttaaggtaatgctctg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4146 tcagtactttatacttctcgaccttaaatgattgttgtaacgtcttaaggtaatgctctg 4205
Query: 226 caatgaatcttctgactgcttcgtcaatacaggaaacagccaagagacgaagagccccgt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4206 caatgaatcttctgactgcttcgtcaatacaggaaacagccaagagacgaagagccccgt 4265
Query: 286 ttacaagatgttcatcatccgctgaagaattcaaattcctagtcaatatgtcctggaaat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4266 ttacaagatgttcatcatccgctgaagaattcaaattcctagtcaatatgtcctggaaat 4325
Query: 346 ctgtcgaaagaaacatgtctctacaaacgccaaggcagatagggaacaccaaagacatag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4326 ctgtcgaaagaaacatgtctctacaaacgccaaggcagatagggaacaccaaagacatag 4385
Query: 406 catctacaagcaaacgtaaagaaacattgccagaatcttcctcggcttcaattaacaatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4386 catctacaagcaaacgtaaagaaacattgccagaatcttcctcggcttcaattaacaatt 4445
Query: 466 gttgtagtatattcccacacttctgctccgtattatctgaatggttggacatcaacgatt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4446 gttgtagtatattcccacacttctgctccgtattatctgaatggttggacatcaacgatt 4505
Query: 526 tcatcgttacaagaagtaatggccgtatctcttgtatgctacttcttaaaagtattcttc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4506 tcatcgttacaagaagtaatggccgtatctcttgtatgctacttcttaaaagtattcttc 4565
Query: 586 tgcaaagaaactccaattgaccccaatccttcacataaccggcaagcatcggcacacact 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4566 tgcaaagaaactccaattgaccccaatccttcacataaccggcaagcatcggcacacact 4625
Query: 646 tccagcatcgtgtttcctcgccattgttatgtatctctgaggtccagttttgaataacgt 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4626 tccagcatcgtgtttcctcgccattgttatgtatctctgaggtccagttttgaataacgt 4685
Query: 706 gcaacaaatccgtcacgtccttcggagatgaacatctttcttttcatacactttgagcat 765
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4686 gcaacaaatccgtcacgtccttcggagatgaacatctttctttcaatacactttgagcat 4745
Query: 766 cggcactattactgccaacaattctattccaaactttattcatagcgttgatatctttat 825
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4746 cggcactatcactgccaacaattctatcccaaactttattcatagcgttgatatctttat 4805
Query: 826 tgaattac-aaaagaattaattc-cagaattgaactatcggtaccagcccaaacacttgt 883
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 4806 tgaattacaaaaagaataaattcacagaattgaactatcggtaccagcccaaacaactgt 4865
Query: 884 atgttagatcgggtttagttatttcttgtttcgaaccctatgat 927
|||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 4866 atgttagatcgggtttagttatctctggtttcgaaccctatgat 4909
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6765
Number of Sequences: 1807
Number of extensions: 6765
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)