BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG10FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1289 1312 0.0
>3x_Contig1289
Length = 5567
Score = 1312 bits (662), Expect = 0.0
Identities = 719/733 (98%), Gaps = 4/733 (0%)
Strand = Plus / Plus
Query: 203 aatatccttcattagtctcttgaaacagaagaagaccattctggaagtcaataagttcga 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aatatccttcattagtctcttgaaacagaagaagaccattctggaagtcaataagttcga 63
Query: 263 acggtacaagaaaccaatgaaacgaaccaaacccaaacctcttctcttagcggcagccat 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 acggtacaagaaaccaatgaaacgaaccaaacccaaacctcttctcttagcggcagccat 123
Query: 323 cttatagtattcatcggacatcatttcaggttgtagaggagtaccgtcttcgtttgtagg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cttatagtattcatcggacatcatttcaggttgtagaggagtaccgtcttcgtttgtagg 183
Query: 383 tagttgatcagtccatcctgtttggaattcagtttgacatctttggactaagtaatgcaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tagttgatcagtccatcctgtttggaattcagtttgacatctttggactaagtaatgcaa 243
Query: 443 aaccaagtgagaaccagtcttatctggggtttctgagtctttaatgctatcatctaagtc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaccaagtgagaaccagtcttatctggggtttctgagtctttaatgctatcatctaagtc 303
Query: 503 tttaacgaccttaccacataattgcgcgtacattgatgaccaatgaggttcatcgcaggc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttaacgaccttaccacataattgcgcgtacattgatgaccaatgaggttcatcgcaggc 363
Query: 563 cttattgaaaatttgttggatgacaatcttcaaagtctcacccttttcttcccatctaga 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cttattgaaaatttgttggatgacaatcttcaaagtctcacccttttcttcccatctaga 423
Query: 623 ttggttagcgatcttcatgatatcatcagaaataggttcgaacatttctaatgtcaattt 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttggttagcgatcttcatgatatcatcagaaataggttcgaacatttctaatgtcaattt 483
Query: 683 attcagcaatgacttcatctttcttgatgcttcttccgcgtcgtaaagttctgttccgtc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 attcagcaatgacttcatctttcttgatgcttcttccgcgtcgtaaagttctgttccgtc 543
Query: 743 tggaagctaac-tgacttctgttttcttcatcttagatttaggaacccatctattagcac 801
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgg-agctaacttgacttctgttttcttcatcttagatttaggaacccatctattagcac 602
Query: 802 ttgggaccaatgggggcacctcaacctttggctctttgacttcttcctctctgaatcttt 861
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 603 ttgggaccaatggggcaacctcaacctttggctcttcgacttcttcctctctgaatcttt 662
Query: 862 aacggccttttctgg-agtgtatgatctattaaattttctatcattcctcttttgactnc 920
|||| | ||||||| |||||||||||||||| |||||||||||| |||| ||||||| |
Sbjct: 663 cacggtcctttctggaagtgtatgatctattagattttctatcatccctc-tttgacttc 721
Query: 921 tttttcgagttgg 933
|| ||||||||||
Sbjct: 722 ttcttcgagttgg 734
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6758
Number of Sequences: 1807
Number of extensions: 6758
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)