BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG10RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1465 0.0
>3x_Contig1763
Length = 22654
Score = 1465 bits (739), Expect = 0.0
Identities = 760/768 (98%)
Strand = Plus / Plus
Query: 46 ggtagatcctgctgtcgttattaaatcccaatcgtttatggaaatattatggaaaattga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21882 ggtagatcctgctgtcgttattaaatcccaatcgtttatggaaatattatggaaaattga 21941
Query: 106 agtatgttccttcaaaaatgatatcaactcaggctgaccccttgagttaccatactgtaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21942 agtatgttccttcaaaaatgatatcaactcaggctgaccccttgagttaccatactgtaa 22001
Query: 166 tgctacacccaatgggacatcctgacatatttctaaatcacttttgtccctatgtataca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22002 tgctacacccaatgggacatcctgacatatttctaaatcacttttgtccctatgtataca 22061
Query: 226 tccttcaacggcccctgtcccattaacatcatcgagagaaacacttttaaacgaaatgct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22062 tccttcaacggcccctgtcccattaacatcatcgagagaaacacttttaaacgaaatgct 22121
Query: 286 ttcgaatgggaacatattaccagagggcattcctgccccaaggaacacgatatttggatc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22122 ttcgaatgggaacatattaccagagggcattcctgccccaaggaacacgatatttggatc 22181
Query: 346 gctaaaatatttcatagttgtcttgataggcgaggccttacgaatcttggcctcatcact 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22182 gctaaaatatttcatagttgtcttgataggcgaggccttacgaatcttggcctcatcact 22241
Query: 406 caataaatgtaacacattagttctacagcccatatctttaactgtcattactgtaactac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22242 caataaatgtaacacattagttctacagcccatatctttaactgtcattactgtaactac 22301
Query: 466 ccgtcgtcagttagttgggtaagctataattcatgtcaaaaaaaacagacacacaataca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22302 ccgtcgtcagttagttgggtaagctataattcatgtcaaaaaaaacagacacacaataca 22361
Query: 526 tcacttcatggatccctaaaacaaaagaagcacagcattgttattcctgatccccattta 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22362 tcacttcatggatccctaaaacaaaagaagcacagcattgttattcctgatccccattta 22421
Query: 586 tacaattcagaaattaaattagctcaaggggccccaacaatttactccacttcgtttgca 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22422 tacaattcagaaattaaattagctcaaggggccccaacaatttactccacttcgtttgca 22481
Query: 646 acatttagagtattatttgctccatcgttcatctaaacctctttgatcccgctactgaca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22482 acatttagagtattatttgctccatcgttcatctaaacctctttgatcccgctactgaca 22541
Query: 706 ttttctatcaaaaaaataaagaccgtccatgacacctgtcacaattctaattccaatccg 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22542 ttttctatcaaaaaaataaagaccgtccatgacacctgtcacaattctaattccaatccg 22601
Query: 766 naacaattcttgaaggatacnntgaacgtgtttatggcactctgattg 813
||||||||||||||||||| | |||||||| ||||||||||||
Sbjct: 22602 gaacaattcttgaaggatactgaaacggtgtttatcgcactctgattg 22649
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6339
Number of Sequences: 1807
Number of extensions: 6339
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)