BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG11FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig952 1606 0.0
>3x_Contig952
Length = 3817
Score = 1606 bits (810), Expect = 0.0
Identities = 853/864 (98%), Gaps = 3/864 (0%)
Strand = Plus / Plus
Query: 90 aaccccaaagctgatcagttccagaggaaagcagtttacaggagtaagcctattaagcca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 aaccccaaagctgatcagttccagaggaaagcagtttacaggagtaagcctattaagcca 1395
Query: 150 aaatggaggataagtgacgaaattatcaaaagactaaattggaatccattcaaagagtta 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 aaatggaggataagtgacgaaattatcaaaagactaaattggaatccattcaaagagtta 1455
Query: 210 aacttgccaaaaaactcggaactacttgaatcattaagagatgtacaagttagatgtacg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 aacttgccaaaaaactcggaactacttgaatcattaagagatgtacaagttagatgtacg 1515
Query: 270 tcctatgcgcttgtcttcaaaagaattccaagttccaaaattgatttgatggtatccaaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 tcctatgcgcttgtcttcaaaagaattccaagttccaaaattgatttgatggtatccaaa 1575
Query: 330 attcccgttagcttcaggagtgtaaatgctatcagttatgatcagttcgatccaaaatct 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 attcccgttagcttcaggagtgtaaatgctatcagttatgatcagttcgatccaaaatct 1635
Query: 390 aaagagaatgtccaagagtctagtcagtgtattgattctcttgcaaatgaggaaactact 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 aaagagaatgtccaagagtctagtcagtgtattgattctcttgcaaatgaggaaactact 1695
Query: 450 gacgtcgatgaagtgacaaacaaaaggataatgacaagtgggaaacgctctttcataaac 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 gacgtcgatgaagtgacaaacaaaaggataatgacaagtgggaaacgctctttcataaac 1755
Query: 510 gcagatttagtaagcataatagcagccaaacggtccaaattgaagagactctccatatct 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1756 gcagatttagtaagcataatagcagccaaacggtccaaattgaagagactctccatatct 1815
Query: 570 aatggtgatgttaacccagttgctactctgaacgagacagttgagcaatctacaatgtcc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 aatggtgatgttaacccagttgctactctgaacgagacagttgagcaatctacaatgtcc 1875
Query: 630 aatgtcactttccaattaagcgataaaagtttccataatgctgaagagaaagtaatcatt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1876 aatgtcactttccaattaagcgataaaagtttccataatgctgaagagaaagtaatcatt 1935
Query: 690 tttaatgcagagtatattgccaaaaactacaagttgatcaatttcttacatcagaacaac 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 tttaatgcagagtatattgccaaaaactacaagttgatcaatttcttacatcagaacaac 1995
Query: 750 ttttgtgtgcttgagatggatttggnggatcattcggatatcttgttagacgcatctacc 809
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1996 ttttgtgtgcttgagatggatttgggggatcattcggatatcttgttagacgcatctacc 2055
Query: 810 tgtctcattcttcgaaatattacttcagtgtatcagaaacaggtcgacagctttccgtta 869
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2056 tgtctcattcttcgaaatattacttcagtgtatcagaaacaggtcgacagcttcccgtta 2115
Query: 870 cttcgagcaatacaagaaatgaaagtgt-aatataaaagaagtggtatcttncttatcgt 928
|| ||||||||||||||| || |||||| |||||||||| ||||||| | ||||||||
Sbjct: 2116 ctccgagcaatacaagaattg-aagtgtaaatataaaag-agtggtaatcttcttatcgt 2173
Query: 929 actcagaacgatcgttagcgttag 952
||||||||||||||||||||||||
Sbjct: 2174 actcagaacgatcgttagcgttag 2197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7047
Number of Sequences: 1807
Number of extensions: 7047
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)