BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG11RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig652 1635 0.0
>3x_Contig652
Length = 2532
Score = 1635 bits (825), Expect = 0.0
Identities = 861/868 (99%), Gaps = 4/868 (0%)
Strand = Plus / Minus
Query: 53 tgatagcgatttatctgtttggttctcaagaatcttactgaataactgatgttgaattac 112
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tgatagcgatttatctgttaggttctcaagaatcttactgaataactgatgttgaattac 1768
Query: 113 ctcctcttccaaaagattctttggacatttcacaacaatacaattagagatatacttgag 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 ctcctcttccaaaagattctttggacatttcacaacaatacaattagagatatacttgag 1708
Query: 173 ggtttccttgtctggacataaattgatagtcttggttataacatcagaggttatgtattt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 ggtttccttgtctggacataaattgatagtcttggttataacatcagaggttatgtattt 1648
Query: 233 ctggtgaatcaattcggagaaagtatcataatcaaatttgtagccatcttcggaaagtct 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 ctggtgaatcaattcggagaaagtatcataatcaaatttgtagccatcttcggaaagtct 1588
Query: 293 ttcatattgcttgaaccctgtccttttggagttacgcaataccggacccaagcttaatgg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 ttcatattgcttgaaccctgtccttttggagttacgcaataccggacccaagcttaatgg 1528
Query: 353 gtaagatttgtcccagtcaccagggtgttggaaataagccacagtatcttcggaaagatc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 gtaagatttgtcccagtcaccagggtgttggaaataagccacagtatcttcggaaagatc 1468
Query: 413 gaccattttcatagcttgaattgctacaggggaaatcttgttggcatccaaatgaattcg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 gaccattttcatagcttgaattgctacaggggaaatcttgttggcatccaaatgaattcg 1408
Query: 473 tttgtagttaacgcaaagcttttggaatctttcagccatttgttttttgaaatctaacaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 tttgtagttaacgcaaagcttttggaatctttcagccatttgttttttgaaatctaacaa 1348
Query: 533 catctcattttgaatatccaaatagtaggtatctagatcatataatctcgaaacagctat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 catctcattttgaatatccaaatagtaggtatctagatcatataatctcgaaacagctat 1288
Query: 593 tccatgcaattcaagattgtaagaataatcctgaatcaattgaggagttttccacaacgt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 tccatgcaattcaagattgtaagaataatcctgaatcaattgaggagttttccacaacgt 1228
Query: 653 ttggaaacaaacaatgaaacctgcgtaattaactgcagaagcgttttcaagagtgaacgc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 ttggaaacaaacaatgaaacctgcgtaattaactgcagaagcgttttcaagagtgaacgc 1168
Query: 713 ttcacaggcactcttaaagaaaggcatttctgataccttcttcaagataggttgcgattg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 ttcacaggcactcttaaagaaaggcatttctgataccttcttcaagataggttgcgattg 1108
Query: 773 atagttttcgaccaatgcattcaaaaattcgaatactagaggcttgctatcggttgaaag 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 atagttttcgaccaatgcattcaaaaattcgaatactagaggcttgctatcggttgaaag 1048
Query: 833 tgcagaaccatgaatatt-acaaaacgaagt-agttaggctccgggcaacctatgcttt- 889
|||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1047 tgcagaaccatgaatattcacaaaacgaagtaagtaaggctccgggcaacctatgctttg 988
Query: 890 gaagtagct-aaaatgtnagggtacaat 916
||||||||| ||||||| ||||||||||
Sbjct: 987 gaagtagctaaaaatgtaagggtacaat 960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6939
Number of Sequences: 1807
Number of extensions: 6939
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)