BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG12RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1484 1544 0.0
>3x_Contig1484
Length = 9345
Score = 1544 bits (779), Expect = 0.0
Identities = 846/861 (98%), Gaps = 6/861 (0%)
Strand = Plus / Plus
Query: 45 cttagctgccatacaaaaaaattt-atttttttgttctttccattttaccaactaacaat 103
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 2976 cttagctgccatacaaaaaaatttcatttttttgttctttccattttactaactaacaat 3035
Query: 104 tgcatcaatatagtacctctgctactcaagctgacgtctctgctttcaaggctttccaat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3036 tgcatcaatatagtacctctgctactcaagctgacgtctctgctttcaaggctttccaat 3095
Query: 164 ctacttacccagaattctctagatggttcaaccacattgcttccaaggctgatcaattcg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3096 ctacttacccagaattctctagatggttcaaccacattgcttccaaggctgatcaattcg 3155
Query: 224 aatccttgccagctgctacttctacaccagctgctgctgaataagaagatgacgatgacg 283
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3156 aatccttgccagctgctacttctacaccagctgctgctgaagaagaagatgacgatgacg 3215
Query: 284 aagtcgatttgttcggttctgacgatgatgtcgatgaagaagctgaacaattgaaggcta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216 aagtcgatttgttcggttctgacgatgatgtcgatgaagaagctgaacaattgaaggcta 3275
Query: 344 agagaatcgctgaatacaacgaaaagaaggctgctaagccaaaggctgctgctaagtcta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3276 agagaatcgctgaatacaacgaaaagaaggctgctaagccaaaggctgctgctaagtcta 3335
Query: 404 tcgttaccttggatgttaagccatgggatgacgaaaccgatttggaagaattggttgcca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3336 tcgttaccttggatgttaagccatgggatgacgaaaccgatttggaagaattggttgcca 3395
Query: 464 acgttaagaacatcgaaatggatggtttgaactggggtgctcaccaatggattccaattg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3396 acgttaagaacatcgaaatggatggtttgaactggggtgctcaccaatggattccaattg 3455
Query: 524 gtttcggtatcaagaagttgcaaattaacatggtcatcgaagatgctaaggtttctcttg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3456 gtttcggtatcaagaagttgcaaattaacatggtcatcgaagatgctaaggtttctcttg 3515
Query: 584 atgaattgcaacaacttatcgaagaagatgaagaccacgtccaatctactgatgttgctg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3516 atgaattgcaacaacttatcgaagaagatgaagaccacgtccaatctactgatgttgctg 3575
Query: 644 ctatgcaaaagttgtaattaaactaatttaagttcttcacctttttccccttacataaat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3576 ctatgcaaaagttgtaattaaactaatttaagttcttcacctttttccccttacataaat 3635
Query: 704 gaataaataaatatactatatttctcaacgaccccctttcgtgcttttcttgctggaccc 763
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 3636 gaataaataaatatactatatttctcaacgaccccc-ttcgtgc-tttcttgctggaccc 3693
Query: 764 gaacccttgctgnctcttntatcctgttatgttcatctttctttta-gtttacagcctct 822
|||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3694 gaacccttgctgtctcttttatcctgttatgttcatctttcttttaggtttacagcctct 3753
Query: 823 gagcattttagaaatagaaa-gtgcataatttaaatgcatattgataattaattaaacat 881
|||||| ||| |||||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct: 3754 gagcatcttaagaatagaaatgtgcataatataaatgcatatagataattaattaaacat 3813
Query: 882 catgctgcattttaaggtaaa 902
||||||||| |||||||||||
Sbjct: 3814 catgctgca-tttaaggtaaa 3833
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9585
Number of Sequences: 1807
Number of extensions: 9585
Number of successful extensions: 113
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)