BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH01RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig394 644 0.0
3x_Contig938 349 6e-96
>3x_Contig394
Length = 1378
Score = 644 bits (325), Expect = 0.0
Identities = 325/325 (100%)
Strand = Plus / Plus
Query: 45 ttcagcgaaaatatcgatcttattcaaaaatagaaccaccgaacttcttgcaaaccatct 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ttcagcgaaaatatcgatcttattcaaaaatagaaccaccgaacttcttgcaaaccatct 1113
Query: 105 actgtttaccactgagtcaaaaagaatcaaagattcctccaatctattttgtgaattgtc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 actgtttaccactgagtcaaaaagaatcaaagattcctccaatctattttgtgaattgtc 1173
Query: 165 ttccagaagtgtttgatcgtattcggataaagagacacaaaagatgatcaatgtcacgtt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 ttccagaagtgtttgatcgtattcggataaagagacacaaaagatgatcaatgtcacgtt 1233
Query: 225 atcaaagcaatgaatccatttcttacgttctgaccgctgtccaccgacatcgaagaagtg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 atcaaagcaatgaatccatttcttacgttctgaccgctgtccaccgacatcgaagaagtg 1293
Query: 285 tagtttcaagttcttatccaaatctatcatagtgtcgaaaatacctgaagtctttttcct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 tagtttcaagttcttatccaaatctatcatagtgtcgaaaatacctgaagtctttttcct 1353
Query: 345 tgttctgataacatcagtgatggtg 369
|||||||||||||||||||||||||
Sbjct: 1354 tgttctgataacatcagtgatggtg 1378
>3x_Contig938
Length = 2936
Score = 349 bits (176), Expect = 6e-96
Identities = 199/206 (96%), Gaps = 1/206 (0%)
Strand = Plus / Plus
Query: 682 tgtattccagtagcttctctctgctgaaaccgttttgatgtaatattttcaactgctgca 741
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtattcc-gtagctcctctctgctgaaaccgttttgatgtaatattttcaactgctgca 59
Query: 742 aaacggtagatttcccactttcacctgaacccaataataatacttttaatgcatttactg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aaacggtagatttcccactttcacctgaacccaataataatacttttaatgcatttactg 119
Query: 802 tctcagatccaccagnagattgaccccctngaacattcactgtgccattccgttttgcca 861
||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 120 tctcagatccaccaggagattgaccccctgaagcattcactgtgccattccgttttgcca 179
Query: 862 gatcagtatcgaaaccttttactcca 887
|||||||||||||||| |||||||||
Sbjct: 180 gatcagtatcgaaaccatttactcca 205
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7646
Number of Sequences: 1807
Number of extensions: 7646
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)