BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH02RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1592 0.0
>3x_Contig1770
Length = 29267
Score = 1592 bits (803), Expect = 0.0
Identities = 858/870 (98%), Gaps = 5/870 (0%)
Strand = Plus / Minus
Query: 48 tgtgctgtcgcctacattttcccccgttggatactataccaaggaaattaccactgaaga 107
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14267 tgtgctgtcgcctacactctcccccgttggatactataccaaggaaattaccactgaaga 14208
Query: 108 tggatggcaagtaatacttaatatcacatgcattccgccaccatggaaatccagctccat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14207 tggatggcaagtaatacttaatatcacatgcattccgccaccatggaaatccagctccat 14148
Query: 168 tgatctgctaccatcgatactaaaaagtgatcctgagaagagttcaaagcgttttgtgct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14147 tgatctgctaccatcgatactaaaaagtgatcctgagaagagttcaaagcgttttgtgct 14088
Query: 228 tttattggattggattaatgaggatcagtcctattggttggaagacattgaagggctgtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14087 tttattggattggattaatgaggatcagtcctattggttggaagacattgaagggctgtt 14028
Query: 288 cgtacaactaaaacaagtgtcaccagaaacaaaggctgctggatctgtcatgatgttaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14027 cgtacaactaaaacaagtgtcaccagaaacaaaggctgctggatctgtcatgatgttaca 13968
Query: 348 cagtgattactgtaagcatcttgagaatacacacactaaatggtcttcaactgctatcga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13967 cagtgattactgtaagcatcttgagaatacacacactaaatggtcttcaactgctatcga 13908
Query: 408 tttcatgcatcaaagtctaagaacgttagcccttcatcttaagataagtctttattcaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13907 tttcatgcatcaaagtctaagaacgttagcccttcatcttaagataagtctttattcaga 13848
Query: 468 cttgaagaacagcgtgcttgccgctaaaagtgcagtcggagtacccttgtctacagaaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13847 cttgaagaacagcgtgcttgccgctaaaagtgcagtcggagtacccttgtctacagaaga 13788
Query: 528 acagaaatcactaatagatatggtaaatcttgagaatgttaacgtaacttatggctctga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13787 acagaaatcactaatagatatggtaaatcttgagaatgttaacgtaacttatggctctga 13728
Query: 588 ctctttgaacaagatcgccatgattgatgagaatttcccattatccgtttataaggacaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13727 ctctttgaacaagatcgccatgattgatgagaatttcccattatccgtttataaggacaa 13668
Query: 648 cttgtccacactaaaacacgatttttcagatgtgattcccgagatcaaaccaaggaatat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13667 cttgtccacactaaaacacgatttttcagatgtgattcccgagatcaaaccaaggaatat 13608
Query: 708 gggatcatgtgctatcacagaacctatcaaaccgcttcctgatctacaatctcttatccc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13607 gggatcatgtgctatcacagaacctatcaaaccgcttcctgatctacaatctcttatccc 13548
Query: 768 agatgttcaagggcagttgtcccatttatatgagtttacaaggaaaaattctttccttga 827
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 13547 agatgttcaagggcagttgtcccatttatatgagttacaaaggaaaaattctt-ccttga 13489
Query: 828 aa-gagtcaccaatcaaccagcagtggtccaagacatcgggtcaggataatacaatggct 886
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 13488 aaagagtcaccaatcaaccagcagtggtccaagacatc-ggtcaggataatacaatggct 13430
Query: 887 ttaaaacgacatccgcagntgataataacc 916
|| ||||||||| |||| |||||||||||
Sbjct: 13429 tt-aaacgacat-cgcaagtgataataacc 13402
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5841
Number of Sequences: 1807
Number of extensions: 5841
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)