BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH03FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1355 1600 0.0
>3x_Contig1355
Length = 8652
Score = 1600 bits (807), Expect = 0.0
Identities = 873/886 (98%), Gaps = 7/886 (0%)
Strand = Plus / Plus
Query: 89 ctcagtagttacctttttgaacttttaacattcagtgtctgatttcattacccggataat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6744 ctcagtagttacctttttgaacttttaacattcagtgtctgatttcattacccggataat 6803
Query: 149 gctcatgtgacttgtccgattgattatctaatccgccatatatggtaaaaatgttcgaac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6804 gctcatgtgacttgtccgattgattatctaatccgccatatatggtaaaaatgttcgaac 6863
Query: 209 gaagagtccatatggatagctgctggaagttgaattacaggctcgatagagttctcctag 268
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6864 gaagagtccatatggagagctgctggaagttgaattacaggctcgatagagttctcctag 6923
Query: 269 agataaataagaagttggtacattgtatagaatatcaaaaccaccagatcagctttcaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6924 agataaataagaagttggtacattgtatagaatatcaaaaccaccagatcagctttcaat 6983
Query: 329 ttcaactgattgctgagtttgcaatatcagtcacgtggtaattttatatctcctatcacc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6984 ttcaactgattgctgagtttgcaatatcagtcacgtggtaattttatatctcctatcacc 7043
Query: 389 tctcttatactcttcatccttaacttagggcagtaaaatgaaaagcggacagtaggttca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7044 tctcttatactcttcatccttaacttagggcagtaaaatgaaaagcggacagtaggttca 7103
Query: 449 gtttgaacatgaggtctcattaaagctagcagctggatccctcacattgcagcattaccg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7104 gtttgaacatgaggtctcattaaagctagcagctggatccctcacattgcagcattaccg 7163
Query: 509 ttccacgtatgatgatgtcaaagcttccctttttgttaaggggagactttgcacgttgga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7164 ttccacgtatgatgatgtcaaagcttccctttttgttaaggggagactttgcacgttgga 7223
Query: 569 aacgaaaatttctcactgaattgatggagagctgaaaaaaatgtgaaataacaaaatgtg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7224 aacgaaaatttctcactgaattgatggagagctgaaaaaaatgtgaaataacaaaatgtg 7283
Query: 629 caaaatataatgtttgatacggacatactgatgcactagattggaaattcangtgcatag 688
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7284 caaaatataatgtttgatacggacatactgatgcactagattggaaattcaggtgcatag 7343
Query: 689 taaaaccctacttcactctggtattgtcataacccaagtgctcattgaaatatagtgtta 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7344 taaaaccctacttcactctggtattgtcataacccaagtgctcattgaaatatagtgtta 7403
Query: 749 caacgattcaattgtgttatcgtgtttacgctggtgttgaaaaaacc-agtacgttgatc 807
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7404 caacgattcaattgtgttatcgtgtttacgctggtgttgaaaaaaccaagtacgttgatc 7463
Query: 808 attttgcgttcttagttaatcactggtttttatcagactttgatttgacactatttgtaa 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7464 attttgcgttcttagttaatcactggtttttatcagactttgatttgacactatttgtaa 7523
Query: 868 ttaaagacaat-atatatcttc-acagcaatttgtaatttaattttctgttgac-aaaac 924
||||||||||| |||||||||| ||||||||||||||||| | ||||||||||| |||||
Sbjct: 7524 ttaaagacaataatatatcttcaacagcaatttgtaattttaatttctgttgacaaaaac 7583
Query: 925 accatcga-tattgtct-acttcattttggcat-atctttgtcaga 967
|| ||||| ||| |||| ||||||||||||||| ||||||||||||
Sbjct: 7584 acaatcgattatagtctcacttcattttggcataatctttgtcaga 7629
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7295
Number of Sequences: 1807
Number of extensions: 7295
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)