BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH03RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1596 0.0
>3x_Contig1629
Length = 12481
Score = 1596 bits (805), Expect = 0.0
Identities = 881/896 (98%), Gaps = 8/896 (0%)
Strand = Plus / Plus
Query: 45 gcttcttggtaccccatctgtggtta-caccttcgaaaccgtgacccttggtaacggcaa 103
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 9612 gcttcttggtaccccatctgtgggtaacaccttcgaaaccgtgacccttggtaacggcaa 9671
Query: 104 cgacatcgatcatttcgttttgttcgaagacagagtcaacggcaacggtcttttcgaagt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9672 cgacatcgatcatttcgttttgttcgaagacagagtcaacggcaacggtcttttcgaagt 9731
Query: 164 gttccttagcccagtcaaccttgtcagagacagaaccaccgttcaattggatttcagcca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9732 gttccttagcccagtcaaccttgtcagagacagaaccaccgttcaattggatttcagcca 9791
Query: 224 aatgagccttcttttgagacaatggagtctttctgacttgggtgtggaccaagactctaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9792 aatgagccttcttttgagacaatggagtctttctgacttgggtgtggaccaagactctaa 9851
Query: 284 caacagaagcgtacttcttgattctggccaattctctgtcgacttgggcaccgttttcag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9852 caacagaagcgtacttcttgattctggccaattctctgtcgacttgggcaccgttttcag 9911
Query: 344 cgtacttagcagagtacttggtgaaagccttcttcttggacttgtaccagttcttgtaga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9912 cgtacttagcagagtacttggtgaaagccttcttcttggacttgtaccagttcttgtaga 9971
Query: 404 atcttctcttgacttcgtcggacaaatgttcagcccagacggtggtcaaggatctcaaac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9972 atcttctcttgacttcgtcggacaaatgttcagcccagacggtggtcaaggatctcaaac 10031
Query: 464 ctcttggggtttcaacgtaaccaacaacaccgacaacaacgattggtggggtgtcaacaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10032 ctcttggggtttcaacgtaaccaacaacaccgacaacaacgattggtggggtgtcaacaa 10091
Query: 524 cggtaacagcttcaacaacttcacgcttgtggaacttggaacctggtctgtccaagtctc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10092 cggtaacagcttcaacaacttcacgcttgtggaacttggaacctggtctgtccaagtctc 10151
Query: 584 taacgatagtggacataccagccttgtaacccaagaaagaggtcaaagcaactggcttag 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 10152 taacgatagtggacataccagccttgtaacccaagaaagaggtcaaagcaactgccttag 10211
Query: 644 tttggtcgtcctttgggaaagacttaactctacctctaacagaggcagctctctttcttg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10212 tttggtcgtcctttgggaaagacttaactctacctctaacagaggcagctctctttcttg 10271
Query: 704 gncagaaacctaaatgaccgtgacgtggagctttgtactttctgtgagacattgtgtatt 763
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10272 gcaagaaacctaaatgaccgtgacgtggagcttcgtactttctgtgagacattgtgtatt 10331
Query: 764 aata-taactagctagagctgtggttaccgttctagag-tttgcgatgggggaagggaaa 821
|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 10332 aatattaactagctagagctgtggttaccgttctagagttttgcgat-ggggaagggaaa 10390
Query: 822 taaac-aagtagataccatt-aacacttt-aactttacatttgatgagatgaagaactat 878
||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct: 10391 taaacaaagtagataccattaaacactttcaactttacatatgatgagatgaagaactat 10450
Query: 879 t-aaaatttttcacttgattttttcatgtttttttaatagtccaagcttcgatgcg 933
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10451 taaaaatttttcacttgattttttcatgttttttaaatagtccaagcttcgatgcg 10506
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6483
Number of Sequences: 1807
Number of extensions: 6483
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)