BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH04RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1655 0.0
>3x_Contig1571
Length = 13536
Score = 1655 bits (835), Expect = 0.0
Identities = 857/862 (99%), Gaps = 2/862 (0%)
Strand = Plus / Plus
Query: 48 aggtggaaagagagcgaggtattacaatcaaagcacagacatgctccatgttttaccagg 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aggtggaaagagagcgagggattacaatcaaagcacagacatgctccatgttttaccagg 702
Query: 108 atcctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtggatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atcctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtggatt 762
Query: 168 ttcgtgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttactcgttgacg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttcgtgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttactcgttgacg 822
Query: 228 cttcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatggatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 cttcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatggatt 882
Query: 288 tgaaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaagcag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tgaaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaagcag 942
Query: 348 aagaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagtgcta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 aagaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagtgcta 1002
Query: 408 aaactggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcctccga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 aaactggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcctccga 1062
Query: 468 ccggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactcttatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 ccggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactcttatt 1122
Query: 528 taggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaaatca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 taggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaaatca 1182
Query: 588 tcactgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtacccagatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 tcactgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtacccagatc 1242
Query: 648 gtgtcgctactaacacactgaaatcaggtcaagtcgggtatttggtacctggcatgaaag 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 gtgtcgctactaacacactgaaatcaggtcaagtcgggtatttggtacctggcatgaaag 1302
Query: 708 aatctaaggatgccaagattggtgatactttgatgcatctcggtaaagaatcgattactg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303 aatctaaggatgccaagattggtgatactttgatgcatctcggtaaagaatcgattactg 1362
Query: 768 aagtgttaccaggatttgaagaaccanaacccatggtcttcgtaggagcttttcctgctg 827
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 1363 aagtgttaccaggatttgaagaaccaaaacccatggtcttcgtaggagctttccctgctg 1422
Query: 828 atggggccgaattc-aagcgttagacgatgatattagtagactcgtcttaaatgatagat 886
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 atggggccgaattcaaagcgttagacgatgatattagtagactcgtcttaaatgatagat 1482
Query: 887 cagtgntccctccaaagagaaa 908
||||| ||||||||||||||||
Sbjct: 1483 cagtg-tccctccaaagagaaa 1503
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5097
Number of Sequences: 1807
Number of extensions: 5097
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)