BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH05FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1561 1594 0.0
>3x_Contig1561
Length = 10959
Score = 1594 bits (804), Expect = 0.0
Identities = 854/870 (98%), Gaps = 1/870 (0%)
Strand = Plus / Plus
Query: 88 gattgcagctttaacatcttcattagtagcctgagtaacgttagctaaaacttcagagtg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5589 gattgcagctttaacatcttcattagtagcctgagtaacgttagctaaaacttcagagtg 5648
Query: 148 gttggctgggttcaattgctggaaaatgcctctcttaccaccgtcgtcgttataataaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5649 gttggctgggttcaattgctggaaaatgcctctcttaccaccgtcgtcgttataataaat 5708
Query: 208 acgttcgccgtttttgactaaaggaacgtccaaagaggagtttttgaacttagataaaga 267
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5709 acgttcgccgttaatgactaaaggaacgtccaaagaggagtttttgaacttagataaaga 5768
Query: 268 agcccttagtaaatcccaatcaaccaaatccttactaccgaacgctttaactggctcatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5769 agcccttagtaaatcccaatcaaccaaatccttactaccgaacgctttaactggctcatt 5828
Query: 328 gccaatttgtttaggtggttgaatatgggatagctgcgcaacgcatcgttttgaagagcg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5829 gccaatttgtttaggtggttgaatatgggatagctgcgcaacgcatcgttttgaagagcg 5888
Query: 388 caatagctgaatacgagatgatagcattttatactgctttttctagcgaatacttgtgat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5889 caatagctgaatacgagatgatagcattttatactgctttttctagcgaatacttgtgat 5948
Query: 448 accgttaatacaactctttcaatattccaagaagtgaagcaaatatagtaatgtgatgat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5949 accgttaatacaactctttcaatattccaagaagtgaagcaaatatagtaatgtgatgat 6008
Query: 508 attttagacctcactatttatcttcttgttaaaggagctttgtttgatccccttatatag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6009 attttagacctcactatttatcttcttgttaaaggagctttgtttgatccccttatatag 6068
Query: 568 aaatcatgcaattttcaaatacataccaaaattactggactgaaatgttcaacatgaaca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6069 aaatcatgcaattttcaaatacataccaaaattactggactgaaatgttcaacatgaaca 6128
Query: 628 tattacatatattcatggagatatcaatgaagattcatccaaatgaattgtaacggaagg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6129 tattacatatattcatggagatatcaatgaagattcatccaaatgaattgtaacggaagg 6188
Query: 688 agaacacgaaagtttttcgcccaagtcacctacatatcggccatatactgtatttcccag 747
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6189 agaacacgaaagttttccgcccaagtcacctacatatcggccatatactgtatttcccag 6248
Query: 748 tatcttacacgaactctcttcgtgatacttcgctaagagataaagattaggttagaggtc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6249 tatcttacacgaactctcttcgtgatacttcgctaagagataaagattaggttagaggtc 6308
Query: 808 gcagaaaaattctttggcggnaagccagtcccgccagatacaatgaaagaaatcgaattc 867
|||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 6309 gcagaaaaatcctttggcggaaagccagtcccgcgagatacaatgaaggaaatcgaattc 6368
Query: 868 cgaactcccctttggtattttcagtgttttgggacttgattacacanaaatcgacagacc 927
||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct: 6369 cgaactcccctttggatttttcagtgtttttggactgaattacacagaaatcgacagagc 6428
Query: 928 a-cacagtgaaaatctatgttgcttatggt 956
| ||||||||||||||||| ||||||||||
Sbjct: 6429 accacagtgaaaatctatggtgcttatggt 6458
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6604
Number of Sequences: 1807
Number of extensions: 6604
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)