BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH05RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1566 0.0
3x_Contig1088 262 1e-69
3x_Contig1464 242 1e-63
3x_Contig1709 240 4e-63
3x_Contig1605 236 6e-62
3x_Contig1769 234 3e-61
3x_Contig540 234 3e-61
3x_Contig1799 218 1e-56
3x_Contig1803 188 1e-47
3x_Contig837 186 5e-47
3x_Contig1446 129 1e-29
>3x_Contig1787
Length = 34189
Score = 1566 bits (790), Expect = 0.0
Identities = 854/868 (98%), Gaps = 6/868 (0%)
Strand = Plus / Plus
Query: 45 actaaagatcaagcaaggatttaataaactgacattcagcattgatacaattttctggcc 104
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 13579 actaaagatcaagcaaggagtcaataaactgacattcagcattgatacaattttctggcc 13638
Query: 105 ttcctttggtaatatgcctgcataagcagataggaaaccgcttactgctatgataaatac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13639 ttcctttggtaatatgcctgcataagcagataggaaaccgcttactgctatgataaatac 13698
Query: 165 aatcaaaactgactgaaatgtcgtccaagaaagttgcagaaaagagatgtgacgcgctgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13699 aatcaaaactgactgaaatgtcgtccaagaaagttgcagaaaagagatgtgacgcgctgt 13758
Query: 225 aacttccatcattgatcgatatattgcatatttttttccaggttgacgagctgatatgcc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13759 aacttccatcattgatcgatatattgcatatttttttccaggttgacgagctgatatgcc 13818
Query: 285 ttagactcgaatattacgaatgctctagatattttgagggtttatgagaaagtaaaacga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13819 ttagactcgaatattacgaatgctctagatattttgagggtttatgagaaagtaaaacga 13878
Query: 345 tcgataacaagttcttatttttaaaacacgttcatgttgtgactaacttgtaattgtaaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13879 tcgataacaagttcttatttttaaaacacgttcatgttgtgactaacttgtaattgtaaa 13938
Query: 405 taaactgtgcaaagttggtatttctttatcagccggctaaagacaatgaaaaaagctatt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13939 taaactgtgcaaagttggtatttctttatcagccggctaaagacaatgaaaaaagctatt 13998
Query: 465 atcacgtgcattgccgcgagttctatacgtttgacggctcgaatggaaacaagttgggtg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13999 atcacgtgcattgccgcgagttctatacgtttgacggctcgaatggaaacaagttgggtg 14058
Query: 525 cattcagcacgtgaagtacttcaatactggaaattttacttcgaatatagcttttctttc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14059 cattcagcacgtgaagtacttcaatactggaaattttacttcgaatatagcttttctttc 14118
Query: 585 ccacacgacactggatactacgctaacctcccggtggttggttaatagttgaacgtcggt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14119 ccacacgacactggatactacgctaacctcccggtggttggttaatagttgaacgtcggt 14178
Query: 645 ggtgtatgggacaaatgcgagttctgttggtgatactggtattttcagtcacgtgttgtt 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14179 ggtgtatgggacaaatgcgagttctgttggtgatactggtattttcagtcacgtgttgtt 14238
Query: 705 aaattaagatctttgggtatctgat-aatccatagtgtttattagctatatatctagtaa 763
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14239 aaattaagatcttt-ggtatctgataaatccatagtgtttattagctatatatctagtaa 14297
Query: 764 tgtatgttgatgcacctggcgatctggcatgactgtgttgattgtccttaccccgatcta 823
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 14298 tgtatgttgatgcacctggcgatctggcatgactgtgttgattgtccttacccggatcta 14357
Query: 824 tngcctnc-tatataat-actcaaatt-gttaatgatgtttcaactagaaacaa-cctta 879
|||| | |||||||| ||||| ||| |||||||||||||||||||||||||| |||||
Sbjct: 14358 atgcctccttatataataactcagattggttaatgatgtttcaactagaaacaatcctta 14417
Query: 880 tgtatcatcttgatacttacccgcctat 907
||||||||||||||||||| ||||||||
Sbjct: 14418 tgtatcatcttgatacttaaccgcctat 14445
>3x_Contig1088
Length = 4585
Score = 262 bits (132), Expect = 1e-69
Identities = 223/246 (90%), Gaps = 6/246 (2%)
Strand = Plus / Plus
Query: 667 tctgttggtgatactggtattttcagtcacgtgttgttaaattaagatctttgggtatct 726
|||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||
Sbjct: 1105 tctgttggtgatactggtatttccagtcacgtgttgttgtttcaagatctttgg-tatct 1163
Query: 727 gat-aatccatagtgtttattagctatatatctagtaatgtatgttgatgcacctggcga 785
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1164 gatgaatccatagtgtttattagctatatatctagtagtgtatgttgatgcacctggcga 1223
Query: 786 tctggcatgactgtgttgattgtccttaccccgatctatngcctnc-tatataat-actc 843
||||||||||| |||||||| |||||| | |||||| |||| | |||||||| ||||
Sbjct: 1224 tctggcatgaccgtgttgatggtccttgttcagatctaatgcctccttatataataactc 1283
Query: 844 aaatt-gttaatgatgtttcaactagaaacaa-ccttatgtatcatcttgatacttaccc 901
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1284 agattggttaatgatgtttcaactagaaacaatccttatgtatcatcttgatacttaacc 1343
Query: 902 gcctat 907
||||||
Sbjct: 1344 gcctat 1349
>3x_Contig1464
Length = 11693
Score = 242 bits (122), Expect = 1e-63
Identities = 219/244 (89%), Gaps = 6/244 (2%)
Strand = Plus / Minus
Query: 669 tgttggtgatactggtattttcagtcacgtgttgttaaattaagatctttgggtatctga 728
|||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||
Sbjct: 5578 tgttggtgatactggtatttccagtcacgtgttgttgtttcaagatctttgg-tatctga 5520
Query: 729 t-aatccatagtgtttattagctatatatctagtaatgtatgttgatgcacctggcgatc 787
| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 5519 tgaatccatagtgtttattagctatatatctagtagtgtatgttgatgtacctggcgatc 5460
Query: 788 tggcatgactgtgttgattgtccttaccccgatctatngcctnc-tatataat-actcaa 845
|||||||||||||| ||| |||||| | |||||| |||| | |||||||| | |||
Sbjct: 5459 tggcatgactgtgtcgatggtccttgttcagatctaatgcctccttatataataattcag 5400
Query: 846 att-gttaatgatgtttcaactagaaacaa-ccttatgtatcatcttgatacttacccgc 903
||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 5399 attggttaatgatgtttcaactagaaacaatccttatgtatcatcttgatacttaaccgc 5340
Query: 904 ctat 907
||||
Sbjct: 5339 ctat 5336
>3x_Contig1709
Length = 16948
Score = 240 bits (121), Expect = 4e-63
Identities = 221/247 (89%), Gaps = 6/247 (2%)
Strand = Plus / Minus
Query: 666 ttctgttggtgatactggtattttcagtcacgtgttgttaaattaagatctttgggtatc 725
|||||||| ||| ||| ||||| |||||||||||||||||||||| |||||||| ||||
Sbjct: 12785 ttctgttgatgaatctgatatttccagtcacgtgttgttaaattaaaatctttgg-tatc 12727
Query: 726 tgat-aatccatagtgtttattagctatatatctagtaatgtatgttgatgcacctggcg 784
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 12726 tggtgaatccatagtgtttattagctatatatctagtaatgtatgttgatgcacctggtg 12667
Query: 785 atctggcatgactgtgttgattgtccttaccccgatctatngcctnc-tatataat-act 842
||||| ||||||||||||||| ||| || || |||||| ||| | |||||||| |||
Sbjct: 12666 atctgtcatgactgtgttgatcgtctttgtccagatctaatacctccttatataataact 12607
Query: 843 caaatt-gttaatgatgtttcaactagaaacaa-ccttatgtatcatcttgatacttacc 900
|| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 12606 cagattggttaatgatgtttcaactagaaacaatccttatgtatcatcttgatacttaac 12547
Query: 901 cgcctat 907
|||||||
Sbjct: 12546 cgcctat 12540
>3x_Contig1605
Length = 12373
Score = 236 bits (119), Expect = 6e-62
Identities = 210/233 (90%), Gaps = 6/233 (2%)
Strand = Plus / Minus
Query: 680 ctggtattttcagtcacgtgttgttaaattaagatctttgggtatctgat-aatccatag 738
||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 325 ctggtatttccagtcacgtgttgttaaattaagatctttgg-tatctgatgaatccatag 267
Query: 739 tgtttattagctatatatctagtaatgtatgttgatgcacctggcgatctggcatgactg 798
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 266 cgtttattagctatatatctagtagtgtatgttgatgcacctggcgatctggcatgactg 207
Query: 799 tgttgattgtccttaccccgatctatngcctnc-tatataat-actcaaatt-gttaatg 855
||||||| |||||| | |||| | |||| | |||||||| ||||| ||| ||| |||
Sbjct: 206 tgttgatcgtccttgtacagatccaatgcctccttatataataactcagattggttgatg 147
Query: 856 atgtttcaactagaaacaa-ccttatgtatcatcttgatacttacccgcctat 907
||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||
Sbjct: 146 atgtttcaactagaaacaatccttacgtatcatcttggtacttaaccgcctat 94
>3x_Contig1769
Length = 25795
Score = 234 bits (118), Expect = 3e-61
Identities = 218/244 (89%), Gaps = 6/244 (2%)
Strand = Plus / Minus
Query: 669 tgttggtgatactggtattttcagtcacgtgttgttaaattaagatctttgggtatctga 728
|||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||
Sbjct: 24464 tgttggtgatactggtatttccagtcacgtgttgttgtctcaagatctttgg-tatctga 24406
Query: 729 t-aatccatagtgtttattagctatatatctagtaatgtatgttgatgcacctggcgatc 787
| |||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 24405 tgaatccatattctttattagctatatatctagtagtgtatgttgatgcacctagcgatc 24346
Query: 788 tggcatgactgtgttgattgtccttaccccgatctatngcctnc-tatataat-actcaa 845
|| ||||||||||||||| ||| || || |||||| |||| | |||||||| |||||
Sbjct: 24345 tgtcatgactgtgttgatcgtctttgtccagatctaatgcctccttatataataactcag 24286
Query: 846 att-gttaatgatgtttcaactagaaacaa-ccttatgtatcatcttgatacttacccgc 903
||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 24285 attggttaatgatgtttcaactagaaacaatccttatgtatcatcttgatacttaaccgc 24226
Query: 904 ctat 907
||||
Sbjct: 24225 ctat 24222
>3x_Contig540
Length = 1644
Score = 234 bits (118), Expect = 3e-61
Identities = 206/228 (90%), Gaps = 6/228 (2%)
Strand = Plus / Plus
Query: 685 attttcagtcacgtgttgttaaattaagatctttgggtatctgat-aatccatagtgttt 743
||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||
Sbjct: 1114 attttcagtcacgtgttgttatttcaagatctttgg-tatctgatgaatccatagtgttt 1172
Query: 744 attagctatatatctagtaatgtatgttgatgcacctggcgatctggcatgactgtgttg 803
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 1173 attagctatatatctagtagtgaatgttgatgcacctggcgatctggcatgactgtgttg 1232
Query: 804 attgtccttaccccgatctatngcctnc-tatataat-actcaaatt-gttaatgatgtt 860
|| |||||| | |||||| |||| | |||||||| | ||| ||| ||||||||||||
Sbjct: 1233 atggtccttgttcagatctaatgcctccttatataataattcagattggttaatgatgtt 1292
Query: 861 tcaactagaaacaa-ccttatgtatcatcttgatacttacccgcctat 907
|||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 1293 tcaactagaaacaatccttatgtatcatcttgatacttaaccgcctat 1340
>3x_Contig1799
Length = 39855
Score = 218 bits (110), Expect = 1e-56
Identities = 216/244 (88%), Gaps = 6/244 (2%)
Strand = Plus / Plus
Query: 669 tgttggtgatactggtattttcagtcacgtgttgttaaattaagatctttgggtatctga 728
||||| |||||||||||||| |||||||||||||||| | ||||||||||| |||||||
Sbjct: 30016 tgttgttgatactggtatttccagtcacgtgttgttatttcaagatctttgg-tatctga 30074
Query: 729 t-aatccatagtgtttattagctatatatctagtaatgtatgttgatgcacctggcgatc 787
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 30075 tgaatccatagtgtttattagctatatatctagtaatgtatgttgatgcacctggtgatc 30134
Query: 788 tggcatgactgtgttgattgtccttaccccgatctatngcctnc-tatataat-actcaa 845
|||||||||||||||||| ||| || | |||| | |||| | |||||||| |||||
Sbjct: 30135 tggcatgactgtgttgatcgtcattgtacagatccaatgcctccttatataataactcag 30194
Query: 846 att-gttaatgatgtttcaactagaaacaa-ccttatgtatcatcttgatacttacccgc 903
||| ||| ||||||| |||||||||||||| ||||| ||||||||||| |||||| ||||
Sbjct: 30195 attggttgatgatgtatcaactagaaacaatccttacgtatcatcttggtacttaaccgc 30254
Query: 904 ctat 907
||||
Sbjct: 30255 ctat 30258
>3x_Contig1803
Length = 52241
Score = 188 bits (95), Expect = 1e-47
Identities = 204/233 (87%), Gaps = 6/233 (2%)
Strand = Plus / Plus
Query: 680 ctggtattttcagtcacgtgttgttaaattaagatctttgggtatctgat-aatccatag 738
||||||||| |||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct: 34892 ctggtatttccagtcacgtgctgttaaattaagatctttgg-tatctgatgaatccatag 34950
Query: 739 tgtttattagctatatatctagtaatgtatgttgatgcacctggcgatctggcatgactg 798
|||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||
Sbjct: 34951 cgtttattagctatatatccagtagtgtatgttgatgcacctggggatctggcatgactg 35010
Query: 799 tgttgattgtccttaccccgatctatngcctnc-tatataat-actcaaatt-gttaatg 855
| ||||| |||||| || |||||| |||| | |||||||| | ||| ||| |||||||
Sbjct: 35011 tattgatggtccttgtccagatctaatgcctccttatataataattcagattagttaatg 35070
Query: 856 atgtttcaactagaaacaacc-ttatgtatcatcttgatacttacccgcctat 907
|| ||||| |||||| || |||||||||||||||||||||| ||||||||
Sbjct: 35071 atatttcattccgaaacacccgttatgtatcatcttgatacttaaccgcctat 35123
>3x_Contig837
Length = 3290
Score = 186 bits (94), Expect = 5e-47
Identities = 129/138 (93%), Gaps = 2/138 (1%)
Strand = Plus / Minus
Query: 669 tgttggtgatactggtattttcagtcacgtgttgttaaattaagatctttgggtatctga 728
||||| |||||||||||||| |||||||||||||||| | ||||||||||| |||||||
Sbjct: 272 tgttgttgatactggtatttccagtcacgtgttgttatttcaagatctttgg-tatctga 214
Query: 729 t-aatccatagtgtttattagctatatatctagtaatgtatgttgatgcacctggcgatc 787
| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 213 tgaatccataatgtttattagctatatatctagtagtgtatgttgatgcacctggcgatc 154
Query: 788 tggcatgactgtgttgat 805
||||||||||||||||||
Sbjct: 153 tggcatgactgtgttgat 136
>3x_Contig1446
Length = 10598
Score = 129 bits (65), Expect = 1e-29
Identities = 100/109 (91%), Gaps = 2/109 (1%)
Strand = Plus / Minus
Query: 668 ctgttggtgatactggtattttcagtcacgtgttgttaaattaagatctttgggtatctg 727
||||||||||||||||||||| |||||||||| ||||| | ||||||||||| |||| |
Sbjct: 2845 ctgttggtgatactggtatttccagtcacgtgctgttatttcaagatctttgg-tatcag 2787
Query: 728 at-aatccatagtgtttattagctatatatctagtaatgtatgttgatg 775
|| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2786 atgaatccatagtgtttattagctatatatctagtagtgtatgttgatg 2738
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6263
Number of Sequences: 1807
Number of extensions: 6263
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 11
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)