BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH06RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1539 1479 0.0
>3x_Contig1539
Length = 11016
Score = 1479 bits (746), Expect = 0.0
Identities = 825/850 (97%), Gaps = 1/850 (0%)
Strand = Plus / Minus
Query: 46 accaggtccagctttgtgattttacgagagagaaatgttgaagagcatgatttagcattg 105
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 9470 accaggtccagctttgtgagcttacgagagagaaatgttgaagagcatgatttagcattg 9411
Query: 106 aagcgagagccatagtggaatcttttggatctgtgactgattactcatccaggaccagat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9410 aagcgagagccatagtggaatcttttggatctgtgactgattactcatccaggaccagat 9351
Query: 166 gcagttagcagttagataatggccccaatgctatgtagtatatacattgctcacggtatg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9350 gcagttagcagttagataatggccccaatgctatgtagtatatacattgctcacggtatg 9291
Query: 226 gagccattcctgctgctttagtccggtgctaccccgcggtaactgctctgcttggatcgt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9290 gagccattcctgctgctttagtccggtgctaccccgcggtaactgctctgcttggatcgt 9231
Query: 286 ggaaaggtccgttcggagtgatatgaactcatcccttttgactaggtggggcatagtgag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9230 ggaaaggtccgttcggagtgatatgaactcatcccttttgactaggtggggcatagtgag 9171
Query: 346 tttctctggtttggcgagaagaagaaactacaatgtgaaaaaagatctatcacgtgatca 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9170 tttctctggtttggcgagaagaagaaactacaatgtgaaaaaagatctatcacgtgatca 9111
Query: 406 atataaatcacgtgatatggaactggaatgttcaaattcgggtaatgaagtttcacatct 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9110 atataaatcacgtgatatggaactggaatgttcaaattcgggtaatgaagtttcacatct 9051
Query: 466 cccccgttcgccgccgtagtctcccccccccccccaaaaaagattatcctatctgaaatt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9050 cccccgttcgccgccgtagtctcccccccccccccaaaaaagattatcctatctgaaatt 8991
Query: 526 gtgaaattaaaacggataaaaaactgaacaatattggattaacaataagtaagaaagaag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8990 gtgaaattaaaacggataaaaaactgaacaatattggattaacaataagtaagaaagaag 8931
Query: 586 aacagctactattaaagatagactgaggcgctgggctcatattcatagactcacctggca 645
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8930 aacagctactatcaaagatagactgaggcgctgggctcatattcatagactcacctggca 8871
Query: 646 atttcaggtataattttaacatcttctatttttttaaaccctgtggcatttagctcagat 705
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8870 atctcaggtataattttaacatcttctatttttttaaaccctgtggcattaggctcagat 8811
Query: 706 ttgacgggaattcattagacacatcatgtggggctatttctttggaactttcaaac-aca 764
||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 8810 ttgacgggaatacattagacacatcatgtggggctatttcttcggaacttccaaacaaca 8751
Query: 765 gaaagaactgcctaagaaggcgattgtcgaccttagaggacatttccaactattggataa 824
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct: 8750 gaaagaactgcctaagaaggcgattgtcgaccttagagaacatatccaactattgaataa 8691
Query: 825 aaaacatgcgcatttgcaaacacagtatgaatagctgcaactatttgcaaagaaaagtct 884
||||| |||||||||||||||||| || ||| ||||| | ||||||||||||||||
Sbjct: 8690 gaaacaggcgcatttgcaaacacagatagatcagcagcaacaacttgcaaagaaaagtct 8631
Query: 885 ttaatttggt 894
| ||| ||||
Sbjct: 8630 tcaatctggt 8621
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8357
Number of Sequences: 1807
Number of extensions: 8357
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)