BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC15ZH08FM1.SCF screened BAC_end
         (948 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1159                                                        1586   0.0  

>3x_Contig1159 
          Length = 4873

 Score = 1586 bits (800), Expect = 0.0
 Identities = 848/858 (98%), Gaps = 5/858 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   tatctttgatgaactctacttcacctcgtgtgaaatgtcaagctactttggccttgagaa 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 tatctttgatgaactctacttcacctcgtgtgaaatgtcaagctactttggccttgagaa 1411

                                                                        
Query: 146  acttagcttcagataccaactaccaattggagattgttagagctggtggattaccagact 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 acttagcttcagataccaactaccaattggagattgttagagctggtggattaccagact 1351

                                                                        
Query: 206  tggttcaattgattcagtcggattctttaccattagtcttggccagcgtcgcatgtatca 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1350 tggttcaattgattcagtcggattctttaccattagtcttggccagcgtcgcatgtatca 1291

                                                                        
Query: 266  gaaatatttccatccatccattaaacgaaggtctaattgtagatgccggatttctaccac 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 gaaatatttccatccatccattaaacgaaggtctaattgtagatgccggatttctaccac 1231

                                                                        
Query: 326  ctttagtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgtttcaa 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 ctttagtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgtttcaa 1171

                                                                        
Query: 386  ctttaagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatctggtg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 ctttaagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatctggtg 1111

                                                                        
Query: 446  taattgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtgaaatta 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 taattgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtgaaatta 1051

                                                                        
Query: 506  gtgcttgctttgctatcttggcactttcagataatactaaatatgatcttttgcaacaag 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 gtgcttgctttgctatcttggcactttcagataatactaaatatgatcttttgcaacaag 991

                                                                        
Query: 566  acgtactaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctggtaact 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  acgtactaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctggtaact 931

                                                                        
Query: 626  ctgctgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatattggagt 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  ctgctgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatattggagt 871

                                                                        
Query: 686  actgnggtcaaccaaacgatggtatcaagggtttcttgatcagattcttgtctagtgact 745
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  actggggtcaaccaaacgatggtatcaagggtttcttgatcagattcttgtctagtgact 811

                                                                        
Query: 746  tccctacctatgaacatattgctctatggaccatttttacactatttgaatgtcacaacg 805
            |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 810  tccctacctatgaacatattgctctatggaccattttacaactatttgaatgtcacaacg 751

                                                                        
Query: 806  aaaccatttac-agttaattaaagaagatcanaaactcgtcaacggggtcaagaaaatcg 864
            ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 750  aaaccatttacaagttaattaaagaagatcaaaaactcgtcaacggggtcaagaaaatcg 691

                                                                        
Query: 865  ctgatg-aaactacgctgtggctagggaatacatgc-agatggacaagata-caacattg 921
            |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 690  ctgatgaaaactacgctgtggctagggaatacatgcaagatggacaagataccaacattg 631

                              
Query: 922  atcac-atggaaattcga 938
            ||||| ||||||||||||
Sbjct: 630  atcacaatggaaattcga 613


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7334
Number of Sequences: 1807
Number of extensions: 7334
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)