BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH08RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 914 0.0
3x_Contig768 172 8e-43
>3x_Contig1737
Length = 17214
Score = 914 bits (461), Expect = 0.0
Identities = 497/507 (98%), Gaps = 2/507 (0%)
Strand = Plus / Minus
Query: 400 tatgtgcggtggatttgaacgctgccactgggaaacaggccaccaaagtcaagaagaaca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17212 tatgtgcggtggatttgaacgctgccactgggaaacaggccaccaaagtcaagaagaaca 17153
Query: 460 agaagatgataaccaagaaaactgtggtggtaaaggaggaggaaccagttcaggagaagc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17152 agaagatgataaccaagaaaactgtggtggtaaaggaggaggaaccagttcaggagaagc 17093
Query: 520 agctacaagagctggtgcaggagctggagaaaccgcctttatcggagcctgtgattgaga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17092 agctacaagagctggtgcaggagctggagaaaccgcctttatcggagcctgtgattgaga 17033
Query: 580 tagagagagtggaggaagagggtaattctccacagcgggtcaatatggctcttgtttcgt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17032 tagagagagtggaggaagagggtaattctccacagcgggtcaatatggctcttgtttcgt 16973
Query: 640 ccacaccactgtctcctctttctctgtctctgttcgatgggtccaaggatgaattggacg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16972 ccacaccactgtctcctctttctctgtctctgttcgatgggtccaaggatgaattggacg 16913
Query: 700 atagtatcgccggcagccagcggatcggtggttttcacaacgatgatgacgatcttgtgc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16912 atagtatcgccggcagccagcggatcggtggttttcacaacgatgatgacgatcttgtgc 16853
Query: 760 anagcctagatcttgaattctttatgccttctatttcacttccaagcttgatgattcctg 819
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16852 aaagcctagatcttgaattctttatgccttctatttcacttccaagcttgatgattcctg 16793
Query: 820 atctcctactgcagtcaccagagatggcagaatcgtttgattt-tttgtggaacanac-t 877
||||||||||||||||||||||||||||||||||||||||||| |||||| | || || |
Sbjct: 16792 atctcctactgcagtcaccagagatggcagaatcgtttgatttctttgtgaaccagactt 16733
Query: 878 ccaaattggtggtttctgtcccaagct 904
| |||||| ||||| ||| ||||||||
Sbjct: 16732 caaaattgttggttcctgccccaagct 16706
>3x_Contig768
Length = 2062
Score = 172 bits (87), Expect = 8e-43
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 54 tgaaatgaatcatcattttttctacaataccaataagacaaagggtaaagtggtaaagac 113
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tgaaatgaatcatcatttcttctacaataccaataagacaaagggtaaagtggtaaagac 32
Query: 114 cgtgtcctgtattcagccattgattattgcc 144
|||||||||||||||||||||||||||||||
Sbjct: 31 cgtgtcctgtattcagccattgattattgcc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6866
Number of Sequences: 1807
Number of extensions: 6866
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)