BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH09FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1624 0.0
>3x_Contig1261
Length = 9103
Score = 1624 bits (819), Expect = 0.0
Identities = 870/883 (98%), Gaps = 3/883 (0%)
Strand = Plus / Minus
Query: 86 ctttgattctctgattcgttcttctgaaattggatacgtgtttgtgactacaaccttatg 145
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4021 ctttgattttctgattcgttcttctgaaattggatacgtgtttgtgactacaaccttatg 3962
Query: 146 aatatcgtctgacatttcaagctgttctagacagtcacctgtaaagataccatgagtagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3961 aatatcgtctgacatttcaagctgttctagacagtcacctgtaaagataccatgagtagc 3902
Query: 206 gataacgtagacttttttagccccacaatttttgaccatgtgttcagcagcagagatgaa 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 gataacgtagacttctttagccccacaatttttgaccatgtgttcagcagcagagatgaa 3842
Query: 266 ggaacctggtctatcgatcatatcatccaagataatagcggtgcggccctgaacgttacc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3841 ggaacctggtctatcgatcatatcatccaagataatagcggtgcggccctgaacgttacc 3782
Query: 326 aaccaaagtgatcaatttttccggttgctcatcatcttcttcgtcatcttccgaatcaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3781 aaccaaagtgatcaatttttccggttgctcatcatcttcttcgtcatcttccgaatcaac 3722
Query: 386 agcatcaaaggaaccaatggttccgatagaaccctcgccatcggactgtatagcgtcagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3721 agcatcaaaggaaccaatggttccgatagaaccctcgccatcggactgtatagcgtcagc 3662
Query: 446 atcatcaacgtattcgtcgtcaacgacgtggcccttgataacacgagcagtttgaatacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3661 atcatcaacgtattcgtcgtcaacgacgtggcccttgataacacgagcagtttgaatacc 3602
Query: 506 gttcgtcaagatgatattctcctcctcattctcaaagtccccgggtctgatgattggttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3601 gttcgtcaagatgatattctcctcctcattctcaaagtccccgggtctgatgattggttt 3542
Query: 566 gtttttccttaacatagattgtttcctttgcttcaattgcaacttatccttgttctgaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3541 gtttttccttaacatagattgtttcctttgcttcaattgcaacttatccttgttctgaga 3482
Query: 626 gtagagatccttggaacgacgacgatccgtatggatcatagcgaagttaatcttcaaaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3481 gtagagatccttggaacgacgacgatccgtatggatcatagcgaagttaatcttcaaaga 3422
Query: 686 gtcagccaaagcagtgactctcttggtgccgcctgggttcttggacacaacaactgcttc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3421 gtcagccaaagcagtgactctcttggtgccgcctgggttcttggacacaacaactgcttc 3362
Query: 746 tctgtagtcttcgacatgctctctgatccatttaccgaggcttggtccgccgtattagtt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3361 tctgtagtcttcgacatgctctctgatccatttaccgaggcttggtccgccgtataagtt 3302
Query: 806 atcgacaggttttggtgaagaacccttgcatttgagatgcatgcaaatccatcgaaacga 865
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3301 atcgacagg-tttggtgaagaacccttgcatttgagatgcatgcaaatccatcgaaacga 3243
Query: 866 cgtgatcagcttctgccatgatcaac-agtttggcaacattcttgc-gtaatggcacctc 923
||||||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||
Sbjct: 3242 cgtgatcagctcctgccatgatcaacaagttggccaacattcttgcagtaatggcacctc 3183
Query: 924 tatgctttcttatcttacattgcttagagtttgggaactgtgg 966
||||||| | ||||||||||||||||||| ||||||||||||
Sbjct: 3182 tatgcttcttcatcttacattgcttagagtatgggaactgtgg 3140
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6190
Number of Sequences: 1807
Number of extensions: 6190
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)