BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH09RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 1592 0.0
>3x_Contig1448
Length = 10333
Score = 1592 bits (803), Expect = 0.0
Identities = 887/907 (97%), Gaps = 8/907 (0%)
Strand = Plus / Minus
Query: 48 tatcaattgtatgaacagggtttagtgctttcccgtaagcaaaatcaaaaaatagagcag 107
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 6101 tatcaattgtatgaacagggtatagtgctttcccgtaagcaaaatcaaaaaatagagcag 6042
Query: 108 aacaaaagagaatcaacaaccatagttgacctttactcattctataacaaaccacacaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6041 aacaaaagagaatcaacaaccatagttgacctttactcattctataacaaaccacacaac 5982
Query: 168 tgctgtagcttctaataaaatgagactatcaagacaaatagcagttgttctgctgaatag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5981 tgctgtagcttctaataaaatgagactatcaagacaaatagcagttgttctgctgaatag 5922
Query: 228 cctaaatcgcgccctttgtcgaacaaatataataattagtaatattcttcaactttagct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5921 cctaaatcgcgccctttgtcgaacaaatataataattagtaatattcttcaactttagct 5862
Query: 288 ttgaatacaaaatggagaagattgatgtaatattaggggaaataagtcatatagctcgta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5861 ttgaatacaaaatggagaagattgatgtaatattaggggaaataagtcatatagctcgta 5802
Query: 348 gtactctcgagccgaaacggttcaagttgatgctttatttatgtgacactgacactgaca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5801 gtactctcgagccgaaacggttcaagttgatgctttatttatgtgacactgacactgaca 5742
Query: 408 tcaatatcataataacattacccggtcctatgccatgtccatcaacggctttgaaaaaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5741 tcaatatcataataacattacccggtcctatgccatgtccatcaacggctttgaaaaaaa 5682
Query: 468 aatgtttgaaaggggaatttgaataataaagatccattcatgattttaacacgttagttg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5681 aatgtttgaaaggggaatttgaataataaagatccattcatgattttaacacgttagttg 5622
Query: 528 aagaaaacatcgaaggtagagacccaacagagcggaaggaaattagcaatgaaacttgac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5621 aagaaaacatcgaaggtagagacccaacagagcggaaggaaattagcaatgaaacttgac 5562
Query: 588 atcaatgtatgtgacacattgtgtactagagtaatttgtgaggtgcttttatcacggaga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5561 atcaatgtatgtgacacattgtgtactagagtaatttgtgaggtgcttttatcacggaga 5502
Query: 648 atcgctgttgaacgttagcaattgcatattaagtatcttangcgtttttctggtatcaat 707
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5501 atcgctgttgaacgttagcaattgcatattaagtatcttaggcgtttttctggtatcaat 5442
Query: 708 acatttatgntttatgttttgattcaacagattatatttcttcagcccttatcagcaact 767
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441 acatttatgttttatgttttgattcaacagattatatttcttcagcccttatcagcaact 5382
Query: 768 aaaagaaagagcttttactaacattttttttcatctatgggggactttatttgtctttta 827
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 5381 aaaagaaagagcttttactaaca-tttttttcatctat-ggtgactttatttgtctttac 5324
Query: 828 aaaaaagctcagtgccagaa-ctgacagggttaagggcattgactttcatttctgagaac 886
||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |
Sbjct: 5323 gaaaaagctcagtgccagaacctgacagggttaagggcattgactttca-tcctgaggaa 5265
Query: 887 cctt--ggttttaatttaccttgtactca-agaagaattgagatatggaactacganacg 943
|||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 5264 ccttggggttttaa-ttaccttgtactcacggaagaattgagatatggaactacgagacg 5206
Query: 944 caaacgc 950
|||||||
Sbjct: 5205 caaacgc 5199
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8552
Number of Sequences: 1807
Number of extensions: 8552
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)