BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH11FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1556 0.0
>3x_Contig1647
Length = 14353
Score = 1556 bits (785), Expect = 0.0
Identities = 829/838 (98%), Gaps = 5/838 (0%)
Strand = Plus / Plus
Query: 88 tctcacggtgataattttgttccaatttgggtcgctttgggattagcagtttctctaact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4553 tctcacggtgataattttgttccaatttgggtcgctttgggattagcagtttctctaact 4612
Query: 148 ttagtttgcgccttccttatgtctgaatctagacatgaaatggccaggttaaagtcccaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4613 ttagtttgcgccttccttatgtctgaatctagacatgaaatggccaggttaaagtcccaa 4672
Query: 208 actaagttcctgagacgaagggagagcatcaatagtgccagatcacggcaatcagatatg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4673 actaagttcctgagacgaagggagagcatcaatagtgccagatcacggcaatcagatatg 4732
Query: 268 gcaggtggagccaatcggtcatatacagtactgaaatatactgctctacaattcttcgac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4733 gcaggtggagccaatcggtcatatacagtactgaaatatactgctctacaattcttcgac 4792
Query: 328 tttttgtctccagtgagaaatttatggattgctcctactgccgccggttccttggttcca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4793 tttttgtctccagtgagaaatttatggattgctcctactgccgccggttccttggttcca 4852
Query: 388 agatacatggttttattgcttgttggaatagatatcatgtttgtcatatctacagcggca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4853 agatacatggttttattgcttgttggaatagatatcatgtttgtcatatctacagcggca 4912
Query: 448 tctataccggcgattgttttagcctttgttttcatgttcggttggagttcagagcaatta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4913 tctataccggcgattgttttagcctttgttttcatgttcggttggagttcagagcaatta 4972
Query: 508 ggttactttgtgtctttaatgggactcggcaaggctgctgctttattagttctcgcaccg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4973 ggttactttgtgtctttaatgggactcggcaaggctgctgctttattagttctcgcaccg 5032
Query: 568 ctggcactacatcttttgaagaaacgattcaaaacgttatcaaaatctgtggaccacaca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5033 ctggcactacatcttttgaagaaacgattcaaaacgttatcaaaatctgtggaccacaca 5092
Query: 628 gacatggttgtactacgtgtttcttccttttttattctactttcgctagtagtattagtg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5093 gacatggttgtactacgtgtttcttccttttttattctactttcgctagtagtattagtg 5152
Query: 688 attagtcgaagtgaatccgctgcatacgtatacgttctcctacaaatactgngaagcatg 747
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5153 attagtcgaagtgaatccgctgcatacgtatacgttctcctacaaatactgggaagcatg 5212
Query: 748 ctatccccaacagtgcaatccacagttatcaaatacggatcg-aaagttctacaggtgag 806
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5213 ctatccccaacagtgcaatccacagttatcaaatacggatcgaaaagttctacaggtgag 5272
Query: 807 ttatttggtgcaatggcattaattanaag-tgtgcaatgatggtaatgcc-tcgttattt 864
||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct: 5273 ttatttggtgcaatggcattaattagaagttgtgcaatgatggtaatgccatcgttattt 5332
Query: 865 ttgaaattgta-tcganaacagtgaatttgga-cccttaattttcgtgtacattccct 920
||||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 5333 ttgaaattgtattcgagaacagtgaatttggaccccttatttttcgtgtacattccct 5390
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5407
Number of Sequences: 1807
Number of extensions: 5407
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)