BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZH11RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1501 0.0
>3x_Contig1647
Length = 14353
Score = 1501 bits (757), Expect = 0.0
Identities = 817/832 (98%), Gaps = 4/832 (0%)
Strand = Plus / Minus
Query: 48 attgtcccggtttcccttgttgttattctttgagttctctgttccatctccatatccaat 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11225 attgtcccggtttcccttggtgttattctttgagttctctgttccatctccatatccaat 11166
Query: 108 gccttcgtctcagcaatcacatgcttgcaatcccctaattccccacacatatcgcacaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11165 gccttcgtctcagcaatcacatgcttgcaatcccctaattccccacacatatcgcacaca 11106
Query: 168 tcatacatgctctcaaaccttacgtcgggcctcgttgcgtgatggttaaaaaggtctgct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11105 tcatacatgctctcaaaccttacgtcgggcctcgttgcgtgatggttaaaaaggtctgct 11046
Query: 228 atggcaactaatccagaatcatgatagttgtcgatctcaaatactcttgacgatatggcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11045 atggcaactaatccagaatcatgatagttgtcgatctcaaatactcttgacgatatggcg 10986
Query: 288 aatgctatagcagcaaattctttaaaattcgaagagacttgcttctgatcttctaaattg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10985 aatgctatagcagcaaattctttaaaattcgaagagacttgcttctgatcttctaaattg 10926
Query: 348 aagtcgaacaaatacggtattttcagcccaaattcttcgttccacttacgggataatgca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10925 aagtcgaacaaatacggtattttcagcccaaattcttcgttccacttacgggataatgca 10866
Query: 408 ataccaactttgaaaccattttctatctcttcttgtggagacaacgcctcgaatacaaca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10865 ataccaactttgaaaccattttctatctcttcttgtggagacaacgcctcgaatacaaca 10806
Query: 468 tccaatgcagtattcttcagcaaaattttctcattatcttcccagtatgccggtggaaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10805 tccaatgcagtattcttcagcaaaattttctcattatcttcccagtatgccggtggaaga 10746
Query: 528 tatagactcccattttgtctgtgtgaaatgctcttcaaatatttgtaccaatggctttca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10745 tatagactcccattttgtctgtgtgaaatgctcttcaaatatttgtaccaatggctttca 10686
Query: 588 acttgaaatatgaatacttcataaatatatgcaatgtttaatgccaacatgccttttacc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10685 acttgaaatatgaatacttcataaatatatgcaatgtttaatgccaacatgccttttacc 10626
Query: 648 tcgctatcaaccagtagattggcaatgctactattttctgcagttgaaacagaagatttc 707
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10625 tcgctatcaaccagtagattggcaatgctactattttctgcagtgaaaacagaagatttc 10566
Query: 708 ggaatccttaggagtacagtgtcctccttcaaatccttttatgcaaacactccttaacca 767
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 10565 ggaatcctaaggagtacagtgtcctccttcaaatcctttaatgcaaacactcctaaacca 10506
Query: 768 ccattatcagatcttctaatctcacagcccgcagtgtggaaaaacccctttggattccag 827
|||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 10505 ccataatcagatcttctaatctcacagccggcagtgtggaaaaacccc-ttggattccag 10447
Query: 828 tacanatgttagaaatattcatctgtatcactggnaggctgaattagacatt 879
|||| ||||||| |||| |||||||||||||||| || ||| ||||||||||
Sbjct: 10446 tacaaatgttag-aata-tcatctgtatcactgg-agtctgtattagacatt 10398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6493
Number of Sequences: 1807
Number of extensions: 6493
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)