BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZA02RM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1619                                                         726   0.0  

>3x_Contig1619 
          Length = 7770

 Score =  726 bits (366), Expect = 0.0
 Identities = 426/445 (95%), Gaps = 1/445 (0%)
 Strand = Plus / Plus

                                                                        
Query: 52   ctttaaccattaagctataaaatg-atatatttgaagggaataggaatcgaacctatgaa 110
            ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 4584 ctttaaccattaagctataaaaactatatatttgaagggaataggaatcgaacctatgaa 4643

                                                                        
Query: 111  gaacacagtcattgagtttacagctcaactccaattaccaacattggagatccctcctat 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4644 gaacacagtcattgagtttacagctcaactccaattaccaacattggagatccctcctat 4703

                                                                        
Query: 171  ataaatatatatataatatatatatattaaccccgcggatatatcccgttantttcttga 230
            |||||||||||||||||||||||||||||||||||||||||||||||| || | ||  ||
Sbjct: 4704 ataaatatatatataatatatatatattaaccccgcggatatatcccgatattatcggga 4763

                                                                        
Query: 231  tatatccgcggggactataaatagttggtcctaatttacttataaattcccattatacta 290
            ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||
Sbjct: 4764 tatatccgcggggactataaatagtttttcctaatttacttataatttcccattatacta 4823

                                                                        
Query: 291  taatatatatactatatattataagccccgcggcatcacccaaccatccggtaagatgat 350
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4824 taatatatatactatatattataagccccgcggtatcacccaaccatccggtaagatgat 4883

                                                                        
Query: 351  accgcgggggaaaaaatatataattaccccttctgtaaatattctataagaatgagaaat 410
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4884 accgcgggggaaaaaatatataattaccccttctctaaatattctataagaatgagaaat 4943

                                                                        
Query: 411  atatttaatgatatgatatatataacatatatgaaccctgcgcgacatggcccaaccttt 470
            ||||||||| |||| |||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct: 4944 atatttaattatattatatatataatatatattaaccctgcgcgacatcgcccaaccttt 5003

                                     
Query: 471  cggttgggtgtgtcgcattggcagg 495
            ||||||||||||||||||| |||||
Sbjct: 5004 cggttgggtgtgtcgcatttgcagg 5028


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,061
Number of Sequences: 1807
Number of extensions: 11061
Number of successful extensions: 271
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)