BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC16ZA02RM1.SCF screened BAC_end (932 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1619 726 0.0 >3x_Contig1619 Length = 7770 Score = 726 bits (366), Expect = 0.0 Identities = 426/445 (95%), Gaps = 1/445 (0%) Strand = Plus / Plus Query: 52 ctttaaccattaagctataaaatg-atatatttgaagggaataggaatcgaacctatgaa 110 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 4584 ctttaaccattaagctataaaaactatatatttgaagggaataggaatcgaacctatgaa 4643 Query: 111 gaacacagtcattgagtttacagctcaactccaattaccaacattggagatccctcctat 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4644 gaacacagtcattgagtttacagctcaactccaattaccaacattggagatccctcctat 4703 Query: 171 ataaatatatatataatatatatatattaaccccgcggatatatcccgttantttcttga 230 |||||||||||||||||||||||||||||||||||||||||||||||| || | || || Sbjct: 4704 ataaatatatatataatatatatatattaaccccgcggatatatcccgatattatcggga 4763 Query: 231 tatatccgcggggactataaatagttggtcctaatttacttataaattcccattatacta 290 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 4764 tatatccgcggggactataaatagtttttcctaatttacttataatttcccattatacta 4823 Query: 291 taatatatatactatatattataagccccgcggcatcacccaaccatccggtaagatgat 350 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 4824 taatatatatactatatattataagccccgcggtatcacccaaccatccggtaagatgat 4883 Query: 351 accgcgggggaaaaaatatataattaccccttctgtaaatattctataagaatgagaaat 410 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 4884 accgcgggggaaaaaatatataattaccccttctctaaatattctataagaatgagaaat 4943 Query: 411 atatttaatgatatgatatatataacatatatgaaccctgcgcgacatggcccaaccttt 470 ||||||||| |||| |||||||||| |||||| ||||||||||||||| ||||||||||| Sbjct: 4944 atatttaattatattatatatataatatatattaaccctgcgcgacatcgcccaaccttt 5003 Query: 471 cggttgggtgtgtcgcattggcagg 495 ||||||||||||||||||| ||||| Sbjct: 5004 cggttgggtgtgtcgcatttgcagg 5028 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,061 Number of Sequences: 1807 Number of extensions: 11061 Number of successful extensions: 271 Number of sequences better than 1.0e-20: 1 length of query: 932 length of database: 10,358,551 effective HSP length: 16 effective length of query: 916 effective length of database: 10,329,639 effective search space: 9461949324 effective search space used: 9461949324 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)