BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA03FM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 1592 0.0
>3x_Contig787
Length = 1880
Score = 1592 bits (803), Expect = 0.0
Identities = 817/822 (99%)
Strand = Plus / Minus
Query: 84 attagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcgtaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 attagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcgtaa 763
Query: 144 aagcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aagcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagt 703
Query: 204 caaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttagggga 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 caaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttagggga 643
Query: 264 gggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgg 583
Query: 324 gtgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtg 523
Query: 384 tgggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttt 463
Query: 444 tccaattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcatagca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tccaattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcatagca 403
Query: 504 gcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaa 343
Query: 564 tctctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactggaa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tctctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactggaa 283
Query: 624 ccagtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggagttc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccagtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggagttc 223
Query: 684 cattcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaagcc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cattcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaagcc 163
Query: 744 aagttacctaattgataggcaagaccagagaccaaagctctagcttctggaggagataat 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aagttacctaattgataggcaagaccagagaccaaagctctagcttctggaggagataat 103
Query: 804 tcggaaagatggattggaaagacaccccagacaccaagaatggagaaccanagcatgaac 863
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 102 tcggaaagatggattggaagaacaccccagacaccaagaatggagaaccaaagcatgaac 43
Query: 864 cctgcacccaacacagcagaaactgtcttcaacatgaaagct 905
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 42 cctgcacccaacacagcagaacttgtcttcaacatgaaagct 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7522
Number of Sequences: 1807
Number of extensions: 7522
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)