BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA03RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig829 1374 0.0
>3x_Contig829
Length = 2277
Score = 1374 bits (693), Expect = 0.0
Identities = 738/749 (98%), Gaps = 3/749 (0%)
Strand = Plus / Minus
Query: 64 atgtttccttggtagaaatcttgcactccaattttttgttgtgtaaatgggttttgatat 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 768 atgtttccttggtagaaatcttgaactccaattttttgttgtgtaaatgggttttgatat 709
Query: 124 gatccatatcttcaaacaatttctgttgcatgtctagaaatgttgaagctattttatcat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gatccatatcttcaaacaatttctgttgcatgtctagaaatgttgaagctattttatcat 649
Query: 184 ttcgtcgtcttaaatgtgctctaattctattttgtttcctttcaccatcagtaagcggtt 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 648 ttcgtcgtcttaaatgtgctctaattctatcccgtttcctttcaccatcagtaagcggtt 589
Query: 244 gtttttccaatttaccagtgatcagattacttctatctcggcctgaaatagtttttgcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtttttccaatttaccagtgatcagattacttctatctcggcctgaaatagtttttgcat 529
Query: 304 gggtcacctcctctggcttttcatcagtcatttcagatcatggaacagccattatccata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gggtcacctcctctggcttttcatcagtcatttcagatcatggaacagccattatccata 469
Query: 364 tgtaacattactgaatgagaaactgcaagtaaactaacaagtaactatctcttgaaatgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgtaacattactgaatgagaaactgcaagtaaactaacaagtaactatctcttgaaatgt 409
Query: 424 gaacagttgcctctgcaactggcagtatttgtttgatcatacattgactctgcaaattat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaacagttgcctctgcaactggcagtatttgtttgatcatacattgactctgcaaattat 349
Query: 484 acaccgctgacacaaagtctcttgagtgtcttgaactgtcagcctgtttcgtgacgaaaa 543
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 348 acaccgctgacacaaagtctcttgagtgtcttgaactgtaagcctgtttcgtgacgaaaa 289
Query: 544 acttggttataacaacgttaatatcagcatctgacgttctgtttgcattcaaacgggatt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acttggttataacaacgttaatatcagcatctgacgttctgtttgcattcaaacgggatt 229
Query: 604 tcaggagccatgccgatgtgaattccgtacagagtgcaatcacgattacaaacaagtgaa 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tcaggagccatgccgatgtgaattccgtacagagtgcaatcacgattacaaacaagtgat 169
Query: 664 acttataatatatgatatgataaattaagaatatctctatacatctgtgaatgaagtgag 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 acttataatatatgatatgataaattaagaatatctctatacatctgtgaatgaagtgag 109
Query: 724 ttgatgggttgaaaa-gaaaatggaaacctcattctaaaccatatttcttcttttctttt 782
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 108 ttgatgggttgaaaaggaaaatggaaacctcattctaaaccatatttcttcttttc-ttt 50
Query: 783 tgggggtaggtcttccaaagaatactttt 811
||| |||| ||||||||||||||| ||||
Sbjct: 49 tggtggta-gtcttccaaagaataatttt 22
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8207
Number of Sequences: 1807
Number of extensions: 8207
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)