BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZA05FM1.SCF screened BAC_end
         (956 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1693                                                        1570   0.0  

>3x_Contig1693 
          Length = 15531

 Score = 1570 bits (792), Expect = 0.0
 Identities = 857/875 (97%), Gaps = 3/875 (0%)
 Strand = Plus / Plus

                                                                       
Query: 84  ttatatgggatcctaatggaatccatctcagggacagtatgaaggaaatcaaatgcaatg 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  ttatatgggatcctaatggaatccatctcagggacagtatgaaggaaatcaaatgcaatg 137

                                                                       
Query: 144 aagtggatttcacagttttcaagtccttgacctcagatgatttgtctaccttcaattatc 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aagtggatttcacagttttcaagtccttgacctcagatgatttgtctaccttcaattatc 197

                                                                       
Query: 204 aatacgaatctttttttttttggtccaaacttataattgatggattattcatgcttttca 263
           ||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aatacgaatcttccataatttggtccaaacttataattgatggattattcatgcttttca 257

                                                                       
Query: 264 cgggaaatttatacaaaccatggtatcatcttgagttggctccaattgaacatccggatt 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgggaaatttatacaaaccatggtatcatcttgagttggctccaattgaacatccggatt 317

                                                                       
Query: 324 ttgttcaatatttctccgaaagaacccacgatatataccagcgtttaaaagcgatagtgg 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttgttcaatatttctccgaaagaacccacgatatataccagcgtttaaaagcgatagtgg 377

                                                                       
Query: 384 aactatttcctactcaggattccatttatcaaaatgccaatattttgatagaccttcggt 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aactatttcctactcaggattccatttatcaaaatgccaatattttgatagaccttcggt 437

                                                                       
Query: 444 tggactacttcaatgacacggactttatacggcaactatcacagcattggttcgagaaac 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggactacttcaatgacacggactttatacggcaactatcacagcattggttcgagaaac 497

                                                                       
Query: 504 ctgtcatacccagttatatagaccttagtttcttattttaaacgagatatacgtttaaaa 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgtcatacccagttatatagaccttagtttcttattttaaacgagatatacgtttaaaa 557

                                                                       
Query: 564 caggtttctacttaaatatacatagtttaattaactctccgaaagtatacatctaaatta 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caggtttctacttaaatatacatagtttaattaactctccgaaagtatacatctaaatta 617

                                                                       
Query: 624 tgagccaaacaactgacccaataattgttataccaattacagcggtgatgataccagcac 683
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgagccaaacaactgacccaataattgttataccaattacagcggtgatgataccagcac 677

                                                                       
Query: 684 cggcttggtcacctttaccgattgttaagggtgccaaattagttggagattgttcggtac 743
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cggcttggtcacctttaccgattgttaagggtgccaaattagttggagattgttcggtac 737

                                                                       
Query: 744 ctgcagctgggttaccagccgaagtaccaccgtcgtcagctgtgtatggagcaggcctgt 803
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctgcagctgggttaccagccgaagtaccaccgtcgtcagctgtgtatggagcaggcctgt 797

                                                                       
Query: 804 ccaaacatctntagttttgcataacttctaatgcagccatttgtttcacctaaa-catat 862
           ||||||||||   |||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 798 ccaaacatcttaggttttgcataacttctaatgcagccatttg-ttcacctaaaccatat 856

                                                                       
Query: 863 ttaccgt-ccattcaccgtagaaacagttcaaacccacagtatggccatcagtaccacct 921
           ||||||| |||| |||||||||| |||||||||||   ||||||||||||||||||||||
Sbjct: 857 ttaccgtcccatccaccgtagaaccagttcaaaccacaagtatggccatcagtaccacct 916

                                              
Query: 922 tgacatgaatcagcagcaccttgagccgatgcttg 956
             |||||||||||||||||||||||||||||||||
Sbjct: 917 gaacatgaatcagcagcaccttgagccgatgcttg 951


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,124
Number of Sequences: 1807
Number of extensions: 11124
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)