BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA05RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1586 1659 0.0
>3x_Contig1586
Length = 12315
Score = 1659 bits (837), Expect = 0.0
Identities = 855/861 (99%)
Strand = Plus / Plus
Query: 40 attagccttcttttccatttgggcttcttcatacaacggtaaactacactttttacccag 99
||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct: 3014 attagccttcttttccaattcggcttcttcatacaacggtaaaatacactttttacccag 3073
Query: 100 ttctgtcttgaaatgtctacctagggcatcacttctggcaaacttcttaccacagcccca 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 ttctgtcttgaaatgtctacctagggcatcacttctggcaaacttcttaccacagcccca 3133
Query: 160 ggaattaccgttcttcaatatacctccacagacatatcttcttttacctttttgaagatc 219
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 3134 ggaattaccgttcttcaatatacctccacagacatatcttcttttacctgtatgaagatc 3193
Query: 220 ctcatgacgatttttgtcatgcattctagcaaatgctttaccgcaaacggaacacacata 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 ctcatgacgatttttgtcatgcattctagcaaatgctttaccgcaaacggaacacacata 3253
Query: 280 aggtctctcgtccgtatgtgatcgtagatgtgacttgagattataaggcctggtgaattt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3254 aggtctctcgtccgtatgtgatcgtagatgtgacttgagattataaggcctggtgaattt 3313
Query: 340 tttatcgcagatatcacatgcataaactgccggatgtttttgagcttgttttttctttgt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3314 tttatcgcagatatcacatgcataaactgccggatgtttttgagcttgttttttctttgt 3373
Query: 400 agtcccaatcaagttcaaagttgactcgccattatcttttggtttatcctcagtattagg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3374 agtcccaatcaagttcaaagttgactcgccattatcttttggtttatcctcagtattagg 3433
Query: 460 aactttgcctccaagtttcaaaagatgttcccgatctctactaagagaacgggcacgttc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3434 aactttgcctccaagtttcaaaagatgttcccgatctctactaagagaacgggcacgttc 3493
Query: 520 atctggagacaaggaccttgtagaaatagactttctcgatgtcgaacgtgatctagagtg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3494 atctggagacaaggaccttgtagaaatagactttctcgatgtcgaacgtgatctagagtg 3553
Query: 580 tgacctagaatgcgatctatttctatttcttcgtccttcaagcatcttatcaaaggtatc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3554 tgacctagaatgcgatctatttctatttcttcgtccttcaagcatcttatcaaaggtatc 3613
Query: 640 tgaaatattgtcattttctaacgggagtctgccttgaagtgtagtaaccgaaagtaaatc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3614 tgaaatattgtcattttctaacgggagtctgccttgaagtgtagtaaccgaaagtaaatc 3673
Query: 700 atgttgcaatgacagtgcattctgtagagatacttgttctgacatatctaacgtagactg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3674 atgttgcaatgacagtgcattctgtagagatacttgttctgacatatctaacgtagactg 3733
Query: 760 agtatcctgtgcattattattgtggctatcattgttttttgtagcatctaagaacatctg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3734 agtatcctgtgcattattattgtggctatcattgttttttgtagcatctaagaacatctg 3793
Query: 820 atgagaattattgaaccccaatgatgcagtggaaggagtcgacagctctgaatgagtagt 879
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3794 atgagaattattgaacccaaatgatgcagtggaaggagtcgacagctctgaatgagtagt 3853
Query: 880 atcaaaagtacttgtcactgt 900
|||||||||||||||||||||
Sbjct: 3854 atcaaaagtacttgtcactgt 3874
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6426
Number of Sequences: 1807
Number of extensions: 6426
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)