BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA07FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1435 0.0
>3x_Contig1687
Length = 12800
Score = 1435 bits (724), Expect = 0.0
Identities = 796/814 (97%), Gaps = 5/814 (0%)
Strand = Plus / Minus
Query: 86 catctgaacaaatggaatccaaaagatccctttgcctataagaaattgaggttgttctgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3132 catctgaacaaatggaatccaaaagatccctttgcctataagaaattgaggttgttctgg 3073
Query: 146 tgtgtttatttgatcgaaagaatgatttgcgtcgcagtcggcaaaccatataccattaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3072 tgtgtttatttgatcgaaagaatgatttgcgtcgcagtcggcaaaccatataccattaac 3013
Query: 206 gaatctgaaattgtctctttcatttttcaacaaagatagcttctacacaagagagacgga 265
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3012 gaatctgaaattgac-ctaccatttttcaacaaagatagcttctacacaagagagacgga 2954
Query: 266 tatggctaagcatgaacatggggttcattttatcaatcaatctttgaaactacgtcgcat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 tatggctaagcatgaacatggggttcattttatcaatcaatctttgaaactacgtcgcat 2894
Query: 326 tgaatctactttcgtagaagaacttaatattatatcacaaaagccaggttcgtcttcttc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 tgaatctactttcgtagaagaacttaatattatatcacaaaagccaggttcgtcttcttc 2834
Query: 386 caacattccgaatcagaagcgaatgactacagctgaaatatctaaaatacaggcacaatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 caacattccgaatcagaagcgaatgactacagctgaaatatctaaaatacaggcacaatt 2774
Query: 446 gccgcaagttaagaaattcttccaagatttagaagtatggagatctaagtgttccattac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 gccgcaagttaagaaattcttccaagatttagaagtatggagatctaagtgttccattac 2714
Query: 506 acatgtcagaaacttcgaaaacgaaacattaaagttatactactacagatcggtgaggct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 acatgtcagaaacttcgaaaacgaaacattaaagttatactactacagatcggtgaggct 2654
Query: 566 tctactacagccttacttagaattgttgaaaccacatgaccggctcttcaaagaatgtca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2653 tctactacagccttacttagaattgttgaaaccacatgaccggctcttcaaagaatgtca 2594
Query: 626 ggcagctgctggtcaaatttgccagctatataaagtctttcatcaaaagaccgttttcgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2593 ggcagctgctggtcaaatttgccagctatataaagtctttcatcaaaagaccgttttcgg 2534
Query: 686 tcattctacccctgctgtgcataccgtttttgttgctggtgtcacatccatttattgtat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2533 tcattctacccctgctgtgcataccgtttttgttgctggtgtcacatccatttattgtat 2474
Query: 746 gtggctagccagaaattgngatgatgaaagaaagaagga-gtttngtgatgtttcc-aac 803
|||||||||||| ||||| ||||||||||||| |||||| ||| ||||||||||| |||
Sbjct: 2473 gtggctagccaggaattgggatgatgaaagaa-gaaggaagttaggtgatgtttccaaac 2415
Query: 804 atactagacctcttgtcagcgcacttctattttctacgatggatgatcttagggcttgtc 863
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 2414 atactagacctcttgtcagcgcactactattttctacgatggatgatctaagggcttgtt 2355
Query: 864 ctg-gtgtttgtatggaatgcctgaaagaccaaa 896
||| ||||||||||| |||| |||||||| ||||
Sbjct: 2354 ctgtgtgtttgtatgtaatggctgaaagatcaaa 2321
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7258
Number of Sequences: 1807
Number of extensions: 7258
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)