BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA08FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1659 0.0
>3x_Contig1577
Length = 10627
Score = 1659 bits (837), Expect = 0.0
Identities = 867/877 (98%), Gaps = 1/877 (0%)
Strand = Plus / Plus
Query: 89 cctttgagcatgaaccattattagaaggacagagatcagggaaatcttcgcatcgtaccc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9653 cctttgagcatgaaccattattagaaggacagagatcagggaaatcttcgcatcgtaccc 9712
Query: 149 taggagccgttgcaccgcaaccgatcaatgtctctaattcgtcgtcgcctggggatgatt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9713 taggagccgttgcaccgcaaccgatcaatgtctctaattcgtcgtcgcctggggatgatt 9772
Query: 209 tttccgacgatgatttctgaattgcccagggatccttctgatctcttgtacagtgtcaga 268
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9773 tttccgacgatgattcc-gaattgcccagggatccttctgatctcttgtacagtgtcaga 9831
Query: 269 cgaggttatcgaaatttcatccataaatcaaagactcttttgaatattatgatattcatc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9832 cgaggttatcgaaatttcatccataaatcaaagactcttttgaatattatgatattcatc 9891
Query: 329 aataccttgtggttagtgacaactttcatcagtgattttttcttcaacatcaactttttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9892 aataccttgtggttagtgacaactttcatcagtgattttttcttcaacatcaactttttg 9951
Query: 389 agaaacagaataaccggtttccaggacttgactcttatttttgtttcaattgttgccaac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9952 agaaacagaataaccggtttccaggacttgactcttatttttgtttcaattgttgccaac 10011
Query: 449 agtttaactctatggtttaacaaaattggttattattcctctttggatcagtatttgaac 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10012 agtttaactctatggtttaacaaaattggttattattcctctttggatcagtatttgaac 10071
Query: 509 gtggttctttgtggattgacattgttcaacttacttacaaatttacttgtgaaatacatc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10072 gtggttctttgtggattgacattgttcaacttacttacaaatttacttgtgaaatacatc 10131
Query: 569 cgtcaacgtatcgggttattaggagtgtgcacttatttatgggctgcagtatcgtttgct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10132 cgtcaacgtatcgggttattaggagtgtgcacttatttatgggctgcagtatcgtttgct 10191
Query: 629 gttagtgctgtcatggatcgttatctatattacttcaatacaaagttccaccctaacaat 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10192 gttagtgctgtcatggatcgttatctatattacttcaatacaaagttccaccctaacaat 10251
Query: 689 tacgatgacgctgaagcagataatgacgaanattcaccgcatcctaacgaacatagtcac 748
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10252 tacgatgacgctgaagcagataatgacgaaaattcaccgcatcctaacgaacatagtcac 10311
Query: 749 aagagcatcagaaatcgtcacaccctaaccgaatgggttagtattgggtttagaacaact 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10312 aagagcatcagaaatcgtcacaccctaaccgaatgggttagtattgggtttagaacaact 10371
Query: 809 gntaaaagtgtgttgntagtatttttcattttgttcacattaaacaatgttcttttctct 868
| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10372 gttaaaggtgtgttgttagtatttttcattttgttcacattaaacaatgttcttttctct 10431
Query: 869 cttgattccatattgaccacttaacaggtagcacagttttcaactgaggcaaatgcagca 928
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 10432 cttgattccatattgaccactaagcaggtagcacaggtttcaactgaggcaaatgcagca 10491
Query: 929 agctacgatgcattccattnggtagatgctgatcaca 965
||||||||||||||||||| |||||||||||||||||
Sbjct: 10492 agctacgatgcattccattgggtagatgctgatcaca 10528
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7088
Number of Sequences: 1807
Number of extensions: 7088
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)