BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA08RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1554 0.0
>3x_Contig1265
Length = 8324
Score = 1554 bits (784), Expect = 0.0
Identities = 830/844 (98%), Gaps = 1/844 (0%)
Strand = Plus / Minus
Query: 63 acctttgtggttggatacggcactcaaaacaagagattttcttagtaagtggttgggtgg 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1974 acctttgtggttggatacggcattcaaaacaagagattttcttagtaagtggttgggtgg 1915
Query: 123 gatacagtcgattaagggttttgagggttctgcgaagccgctaaaagtaggcgataaagc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1914 gatacagtcgattaagggttttgagggttctgcgaagccgctaaaagtaggcgataaagc 1855
Query: 183 agatttcttcgacgttgtcaaagtgttttttgatgaactatttttgaagtctactgacaa 242
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1854 agatttcttcgacgttgtcaaagtgtcggatgatgaactatttttgaagtctactgacaa 1795
Query: 243 gcatttaagtgtattggtagcattgcaaatcaagaaccacgatgacctgagaaatgaatt 302
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1794 gcatttaagtgtattggtagcattgctaatcaagaaccacgatgacctgagaaatgaatt 1735
Query: 303 cagaatagccaccagtgtggttacctacaatttttttggcagggtgtacatgctgcctgt 362
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 cagaatagccaccagtgtggtcacctacaatttttttggcagggtgtacatgctgcctgt 1675
Query: 363 gtctatggcacatggctttattgttaggtccatgttggataaactcgagcccatttgaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 gtctatggcacatggctttattgttaggtccatgttggataaactcgagcccatttgaaa 1615
Query: 423 cttatgccaacatatggtaaaaaatatggtggatctgtggtgtttgggcttgcagtcata 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 cttatgccaacatatggtaaaaaatatggtggatctgtggtgtttgggcttgcagtcata 1555
Query: 483 taacaattaacatacataatatcatcactattacatctttaaatctcggtcacctatacc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 taacaattaacatacataatatcatcactattacatctttaaatctcggtcacctatacc 1495
Query: 543 acctcagaaaatacagctctagagttgtcagctgataaatgctagctaggaattttgtat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 acctcagaaaatacagctctagagttgtcagctgataaatgctagctaggaattttgtat 1435
Query: 603 aatacatcgtaatttacaggtaaatttctgcgatgcctgtcaatacttttcaacaaaggc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 aatacatcgtaatttacaggtaaatttctgcgatgcctgtcaatacttttcaacaaaggc 1375
Query: 663 aatgcaagataaatcggtatggtcttgaaacctgatattcctgcaataggaacgcatctg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 aatgcaagataaatcggtatggtcttgaaacctgatattcctgcaataggaacgcatctg 1315
Query: 723 attctgccctacatgattttccggttaccctagttaaataccaatggnggctcatcatga 782
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1314 attctgccctacatgattttccggttaccctagttaaataccaatgg-ggctcatcatga 1256
Query: 783 aatattttcatatcacgtgcaaaataatggcattgatttgacatttctaaaaacagaaat 842
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 aatatttccatatcacgtgcaaaataatggcattgatttgacatttctaaaaacagaaat 1196
Query: 843 agccagaaaccaccccacagagtttatactttatgattactgaagccctcttctgttgtg 902
||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1195 agcaggaaaccaacccacagagtttatacttaatgataactgaagccctcttctgttgtg 1136
Query: 903 agat 906
||||
Sbjct: 1135 agat 1132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6537
Number of Sequences: 1807
Number of extensions: 6537
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)