BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA10FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1522 0.0
>3x_Contig1794
Length = 36744
Score = 1522 bits (768), Expect = 0.0
Identities = 852/871 (97%), Gaps = 7/871 (0%)
Strand = Plus / Plus
Query: 86 ccaaaacttcaagttggatagcagcttcggcagcagcaacttcgtcagcagaggagacgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7866 ccaaaacttcaagttggatagcagcttcggcagcagcaacttcgtcagcagaggagacgt 7925
Query: 146 tcttttgagcttcagccaacagagatctaacgttttctggagagaaagactctaatggga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7926 tcttttgagcttcagccaacagagatctaacgttttctggagagaaagactctaatggga 7985
Query: 206 atgcttcaacggattttttagccaaggtagagtctggttggacagtagcgaaaccaccgg 265
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7986 atgcttcaacggaagtgatagccaaggtagagtctggttggacagtagcgaaaccaccgg 8045
Query: 266 aaacaaagaacttcttagaagaagaaccttccaagacttcaacaacacctggaaccaatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8046 aaacaaagaacttcttagaagaagaaccttccaagacttcaacaacacctggaaccaatt 8105
Query: 326 gttcaacagttggaacgtggttagccaagataccgatttgaccagacttagctggcaagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8106 gttcaacagttggaacgtggttagccaagataccgatttgaccagacttagctggcaagt 8165
Query: 386 tgacttgggtaactggagtaccagaaaacaaggtttgatgtggcaaagcaaattgcaact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166 tgacttgggtaactggagtaccagaaaacaaggtttgatgtggcaaagcaaattgcaact 8225
Query: 446 tcaaagcaccatcggcagcttcagcataagtacgcttagcaacaacggtgttgacagatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8226 tcaaagcaccatcggcagcttcagcataagtacgcttagcaacaacggtgttgacagatt 8285
Query: 506 tggccaaagttctagcagcagataaacggaacattataggtgattattttctggtaatgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8286 tggccaaagttctagcagcagataaacggaacattataggtgattattttctggtaatgt 8345
Query: 566 gttcttatgatttcgattctggacaagaagcaattaaaacagactgtaatgaattcaatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8346 gttcttatgatttcgattctggacaagaagcaattaaaacagactgtaatgaattcaatt 8405
Query: 626 gaaacaaaatctaataacactaaacaaagatcaaaatacaaaagtctaagaaggaacaac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8406 gaaacaaaatctaataacactaaacaaagatcaaaatacaaaagtctaagaaggaacaac 8465
Query: 686 agtagtccaacaagaacagttctagtaaaaccttattcacaaatatcgtaaagctgtaat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8466 agtagtccaacaagaacagttctagtaaaaccttattcacaaatatcgtaaagctgtaat 8525
Query: 746 taaaactaaaatcccattcttttcattttcaaaaatcctaattgaggcctttggaaactg 805
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 8526 taaaactaaaatcccattcttttcattttcaaaaatcctaattgaggccttggaaaactg 8585
Query: 806 anaactgaaaaagttgatgcactcgagaaagagtgttttctagcctgtgaaacgtcaatg 865
| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 8586 aaaactgaaaaagttgatgcactcgagaagaggtgttttcaagcctgtgaaacgtcaatg 8645
Query: 866 gctttgctgaaaaga-cgttgagggacaccta-ctct-gtgtagtcg-ggaatgagtgt- 920
||||||||||||||| |||||||||||||||| |||| ||||||||| | |||||||||
Sbjct: 8646 gctttgctgaaaagaccgttgagggacacctagctctagtgtagtcgtgaaatgagtgta 8705
Query: 921 tatacgtgac-cctgtttgca-tactttttg 949
|||||||||| |||||||||| |||||||||
Sbjct: 8706 tatacgtgacacctgtttgcagtactttttg 8736
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7588
Number of Sequences: 1807
Number of extensions: 7588
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)