BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA10RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1310 1425 0.0
>3x_Contig1310
Length = 7790
Score = 1425 bits (719), Expect = 0.0
Identities = 827/857 (96%), Gaps = 5/857 (0%)
Strand = Plus / Plus
Query: 48 tgtctaagaacgccgttctatgtcgagtaaactgcgcatatccaagaaatacaacaagac 107
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 2022 tgtctaagaacgccgttccagttcgagtaaactgcgcatatccaagaaatacaacaagac 2081
Query: 108 tataggatatggcacacagagcgtttatacaggtgattttcaccggggcacaggtgtttg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2082 tataggatatggcacacagagcgtttatacaggtgattttcaccggggcacaggtgtttg 2141
Query: 168 gacgtgcgtttgcggaatcttacagacaagcagcagctcaaacagctaaactaacggcaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2142 gacgtgcgtttgcggaatcttacagacaagcagcagctcaaacagctaaacaaacggcaa 2201
Query: 228 atgcttctagaggccgtggtgctagcgcagaatacggaggtatcactttagatgagagtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 atgcttctagaggccgtggtgctagcgcagaatacggaggtatcactttagatgagagtt 2261
Query: 288 ctaagattttgaacattgagaatgaacaggatatgaatttggataaaatcaacgaaagat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 ctaagattttgaacattgagaatgaacaggatatgaatttggataaaatcaacgaaagat 2321
Query: 348 tcaagtatttgttcgagatcaacgataaagagaaaggtggatcattctacttgcagagta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 tcaagtatttgttcgagatcaacgataaagagaaaggtggatcattctacttgcagagta 2381
Query: 408 agatttacagggcagcagagcgtttgaagtacgagcttgctgaaaaggaaaaggctgcca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2382 agatttacagggcagcagagcgtttgaagtacgagcttgctgaaaaggaaaaggctgcca 2441
Query: 468 atccagaactgaatcaagaacaagcgaagtcgagttccacgacggagtcaccggagttga 527
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2442 atccagaactgaatcaag-acaagcgaagtcgagttccacgacggagtcaccggagttga 2500
Query: 528 aaaaatagcgtaaggtcattctctctggcctagtataagttttgtaaatagttcaaataa 587
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2501 aaaaatagcgtaaggtcattttctctggcctagtataagttttgtaaatagttcaaataa 2560
Query: 588 accgaaatacacgcatcgcatgctcatcgtatcatgttcagcacaatatcatcagtggtt 647
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2561 accgaaattcacgcatcgcatgctcatcgtatcatgttcagcacaatatcatcagtggtt 2620
Query: 648 gatgaagctgatttatgtctacaactaattaatacaaaaattctctagaagatgggaaaa 707
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2621 gatgaagctgatttttttctacaactaattaatacaaaaattctctagaagatgggaaaa 2680
Query: 708 ctgttccattatgaagaagggcacaacggagagtgaaaatccaaactcttangcagccat 767
||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 2681 ctgttccatcatgaagaagggcacaacggagagtgaaaatccaaactgtcaggcagccat 2740
Query: 768 tacgcatagccctttggat-acatgncacacctggaag-acaactagagcgagctgttaa 825
|||||| |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 2741 tacgcaaagccctctggatcacatgcaacacctggaagaacaactagagcgagctgttaa 2800
Query: 826 accgctt-ttattatcactttccagaccttttcataatgtgtaaaagaaag-agggatgc 883
||||||| | || |||||||||||||||| ||||||||| |||||||||| || |||||
Sbjct: 2801 accgcttctaatcatcactttccagacctcttcataatggttaaaagaaagaagtgatgc 2860
Query: 884 ataaatacgggaaaagg 900
| ||| ||||||||||
Sbjct: 2861 aaaaaaccgggaaaagg 2877
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6036
Number of Sequences: 1807
Number of extensions: 6036
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)