BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA11FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1592 0.0
>3x_Contig1613
Length = 13977
Score = 1592 bits (803), Expect = 0.0
Identities = 851/864 (98%), Gaps = 3/864 (0%)
Strand = Plus / Minus
Query: 82 tcatctatttgtttatttgtttctattacaataaagccataaagttttgttcagattttt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13889 tcatctatttgtttatttgtttctattacaataaagccataaagttttgttcagattttt 13830
Query: 142 tttcatagaagggaacttatggggaacttatggcactgatactattaacgttaactcctt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13829 tttcatagaagggaacttatggggaacttatggcactgatactattaacgttaactcctt 13770
Query: 202 gatgaatgacttttttttatcttacaataaactaacataggaattaatttctcatgtaat 261
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13769 gatgaatgactatactttatcttacaataaactaacataggaattaatttctcatgtaat 13710
Query: 262 ctcttaggtagtttcctagcttttgcgctccttgttcaacagcgttcttcaacaggtcaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13709 ctcttaggtagtttcctagcttttgcgctccttgttcaacagcgttcttcaacaggtcaa 13650
Query: 322 attcgtcatcagcaccagacgtgaactccatgaagtttcgtccgccaagagaaccgcttc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13649 attcgtcatcagcaccagacgtgaactccatgaagtttcgtccgccaagagaaccgcttc 13590
Query: 382 tgtttgttcttgttccattttgtggattcaatggtcttccaaattcgtcgaactgatctt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13589 tgtttgttcttgttccattttgtggattcaatggtcttccaaattcgtcgaactgatctt 13530
Query: 442 cgctctggccttcgccaaagtatgaggctgaagaaatagatgtggcattactgaagttct 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13529 cgctctggccttcgccaaagtatgaggctgaagaaatagatgtggcattactgaagttct 13470
Query: 502 gtctgagtttttcttgagcttctttacttgcctcgtcatcgtagcttccacgagaaaaca 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13469 gtctgagtttttcttgagcttctttacttgcctcgtcatcgtagcttccacgagaaaaca 13410
Query: 562 cctggtctgaagagatacccttttgttctccgaatttttgggcaatcttacctgtgtact 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13409 cctggtctgaagagatacccttttgttctccgaatttttgggcaatcttacctgtgtact 13350
Query: 622 ttggaccagaggcagccctccttgattcgttagttttgttttgttccttttctgcattat 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13349 ttggaccagaggcagccctccttgattcgttagttttgttttgttccttttctgcattat 13290
Query: 682 tggaagtcataccaaacccaagtttagccaactttggttttgccgcatctttgcttccag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13289 tggaagtcataccaaacccaagtttagccaactttggttttgccgcatctttgcttccag 13230
Query: 742 ttaatcctacattggaagcattgatttgatcgaaagtaataccatcattgtatctgttgg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13229 ttaatcctacattggaagcattgatttgatcgaaagtaataccatcattgtatctgttgg 13170
Query: 802 accattcgtcgtcctccgcgtcttcgacattggtagatggcttggtttatttgctgctag 861
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 13169 accattcgtcgtcctccgcgtcttcgacattggtagatggcttggttattttgctgctag 13110
Query: 862 agctgaaa-cagatttttgttgnaattggcgca-gagtggcatcgtatatggaattcgat 919
|||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 13109 agctgaaaccagatttttgttggaa-tggcgcaggagtggcatcgtatatggaattcgat 13051
Query: 920 aattnattggatttangggaagtg 943
|| | |||||| ||| ||||||||
Sbjct: 13050 aaattattggagttaagggaagtg 13027
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6774
Number of Sequences: 1807
Number of extensions: 6774
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)