BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZA11RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1590 0.0
>3x_Contig1788
Length = 28493
Score = 1590 bits (802), Expect = 0.0
Identities = 855/870 (98%), Gaps = 2/870 (0%)
Strand = Plus / Plus
Query: 41 gcttctgttgcagaggcaaatttt-atgctgtgcagactcagaacgagcatttgcaaaca 99
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 19518 gcttctgttgcagaggcaaattatcatgctgtgcagactcagaacgaggatttgcaaaca 19577
Query: 100 cagttgcaacaagctcaagaagaggaaaggcagttaaaggagaggttggcccagtttaac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19578 cagttgcaacaagctcaagaagaggaaaggcagttaaaggagaggttggcccagtttaac 19637
Query: 160 actttgtcctctcagttacagcaacagttggctgaagttcaagagaatgctttattttta 219
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 19638 actttgtcctctcagttacagcaacagttggctgaagttcaagagaatgctaaagctgaa 19697
Query: 220 agatccagagtcgatattcatgccaagcagttagaactttcagagatgactgccaacaat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19698 agatccagagtcgatattcatgccaagcagttagaactttcagagatgactgccaacaat 19757
Query: 280 cttcaaacagaaattcaaagtcttgaacaaacccttggtatctacttatcaaagcacaaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19758 cttcaaacagaaattcaaagtcttgaacaaacccttggtatctacttatcaaagcacaaa 19817
Query: 340 gaattggatgactacaaagctactattgaggctcagcacgctgagatggaaaacaaacat 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19818 gaattggatgactacaaagctactattgaggctcagcacgctgagatggaaaacaaacat 19877
Query: 400 aagcaataccttgcaacttctgaagaagtacatgcacgtgaattggaagttcaatccaga 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19878 aagcaataccttgcaacttctgaagaagtacatgcacgtgaattggaagttcaatccaga 19937
Query: 460 acagcagagatagaaaagcaggaacaactataccgtgatcaagtatcgaggttgcaagaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19938 acagcagagatagaaaagcaggaacaactataccgtgatcaagtatcgaggttgcaagaa 19997
Query: 520 ctatttaatgatttgaataaaaggaagtcggagtttgaagcagcaaatgcagagtttgag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19998 ctatttaatgatttgaataaaaggaagtcggagtttgaagcagcaaatgcagagtttgag 20057
Query: 580 aagcaacagtatgactatgccgatagagtccaaaaattctctgagaatcaaatgaagtta 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20058 aagcaacagtatgactatgccgatagagtccaaaaattctctgagaatcaaatgaagtta 20117
Query: 640 gccatgggagaaacccctgatgatgagtatacaaacgaattgattcaaaaaagactgcaa 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20118 gccatgggagaaacccctgatgatgagtatacaaacgaattgattcaaaaaagactgcaa 20177
Query: 700 attcagactgcccagccagctgaggaggaggaaaaaccagaaagtgttttcgacaaagat 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20178 attcagactgcccagccagctgaggaggaggaaaaaccagaaagtgttttcgacaaagat 20237
Query: 760 gttccaactcctgtctcacaaactgaacctgacgaagtacaaaatcaacatttagaagat 819
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 20238 gttccaactcctgtctcacaaactgaacctgacgaagaacaaaatcaacaattagaagat 20297
Query: 820 gatcaattaagcgagcagcaattacatgaccagcagggtaatgatgaagttgctgccgaa 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20298 gatcaattaagcgagcagcaattacatgaccagcagggtaatgatgaagttgctgccgaa 20357
Query: 880 gcgatggcaagatcttttccaaggaagttt 909
|||||||| |||| |||| ||||||||||
Sbjct: 20358 gcgatggc-agattctttcgaaggaagttt 20386
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7718
Number of Sequences: 1807
Number of extensions: 7718
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)