BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB04FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1608 0.0
>3x_Contig1729
Length = 15481
Score = 1608 bits (811), Expect = 0.0
Identities = 852/865 (98%), Gaps = 1/865 (0%)
Strand = Plus / Plus
Query: 87 ttattttttatcttcccacagtaagtgttcaatccagctttaccattggtgaagttatcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7402 ttattttttatcttcccacagtaagtgttcaatccagctttaccattggtgaagttatcg 7461
Query: 147 aaatggaacaggcatttatcgtttttagtatatgctactttactgagaattgatataaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7462 aaatggaacaggcatttatcgtttttagtatatgctactttactgagaattgatataaag 7521
Query: 207 tgcacgggcttctttttatttgatccatgctgatagtatttgttcaagcattcaggacca 266
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7522 tgcacgggcttcgatacaattgatccatgctgatagtatttgttcaagcattcaggacca 7581
Query: 267 ggaatatactcatatgggtacttttccatggtgctcgcactccattaccttttcctttct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7582 ggaatatactcatatgggtacttttccatggtgctcgcactccattaccttttcctttct 7641
Query: 327 ttaactgaagttgtttctaacgtttttcttcaaccttcaatgcaccgtttaattcattgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7642 ttaactgaagttgtttctaacgtttttcttcaaccttcaatgcaccgtttaattcattgg 7701
Query: 387 atgcgctcataaaaatcatatctcaacatggaattaatatagagatggttcccagataaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7702 atgcgctcataaaaatcatatctcaacatggaattaatatagagatggttcccagataaa 7761
Query: 447 acagcgccaacggctgcgagcaaccacaagagagccaaagcaccgaattgaaatggcaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7762 acagcgccaacggctgcgagcaaccacaagagagccaaagcaccgaattgaaatggcaat 7821
Query: 507 aggtgaaaggaaaagtatgataattgaatgtttatcgaaaatttaacaatacattattta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7822 aggtgaaaggaaaagtatgataattgaatgtttatcgaaaatttaacaatacattattta 7881
Query: 567 ctaacatttagccaaatgatataatcaactgtagggaattttagatcaagaaagaaaggg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7882 ctaacatttagccaaatgatataatcaactgtagggaattttagatcaagaaagaaaggg 7941
Query: 627 ttcgcagagcctaaagttctagtgacgcaggacgagtggtacaacgaagcagtaaagatc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7942 ttcgcagagcctaaagttctagtgacgcaggacgagtggtacaacgaagcagtaaagatc 8001
Query: 687 gaagatggcgcagaacgttggtttctttccgatataaagaagactatgaagggatatctg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8002 gaagatggcgcagaacgttggtttctttccgatataaagaagactatgaagggatatctg 8061
Query: 747 gaggcaatgcgagcttatgatagagccttgatttctgagaaacctaattacgatgacaca 806
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8062 gaggcaatgcgagcttatgatagagccttgatttctgagaaacctaataacgatgacaca 8121
Query: 807 tacaatatccattataaccaaactagactgttgctttaaatctatactgattatgtgaac 866
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 8122 tacaatatccattataaccaaactagactgttgcttaaaatctatactgattatgtgaac 8181
Query: 867 gtcgatggttatatcaaactgctttaatatgtnaaattaagatggaattgattccgtana 926
||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||| |
Sbjct: 8182 gtcgatggttatatcaacctgcttcaatatgtt-aatttagatggaattgattccgtaga 8240
Query: 927 aaccttactggtgaccattgacgct 951
|||||||||||||||||||||||||
Sbjct: 8241 aaccttactggtgaccattgacgct 8265
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6763
Number of Sequences: 1807
Number of extensions: 6763
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)