BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB04RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1596 0.0
>3x_Contig1784
Length = 28126
Score = 1596 bits (805), Expect = 0.0
Identities = 839/848 (98%), Gaps = 2/848 (0%)
Strand = Plus / Minus
Query: 42 gcttgggcacaaagtgtgtctaatca-gtacagagcccttggatggcagcaaacccagtg 100
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 5641 gcttgggcacaaagtgtgtctaaacaagtacagagcccttggatggcagcaaacccagtg 5582
Query: 101 atactcgctgtcatagatcctagggtaacagctcctaattcattgcttcccaaatgtgaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5581 atactcgctgtcatagatcctagggtaacagctcctaattcattgcttcccaaatgtgaa 5522
Query: 161 acggaaaaaattgatgctaaagataaagagttttgtaaaatgaaagtcagtacaatatgt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 5521 acggaaaaaattgatgctaaagataaagagttttgtaaaatgaaagtcagtacaagaggt 5462
Query: 221 gatgcattagatgttatcactatggcctctctcttaaatgtggtatttatgtctttccct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5461 gatgcattagatgttatcactatggcctctctcttaaatgtggtatttatgtctttccct 5402
Query: 281 gattcaattgcatcctcccaagtttcaatcacttcttgatcctcgattgatgatgttggt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5401 gattcaattgcatcctcccaagtttcaatcacttcttgatcctcgattgatgatgttggt 5342
Query: 341 gcaaaggaagagtttggatcatttgttgaatatgcagcatgattatgaagagcatgatta 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5341 gcaaaggaagagtttggatcatttgttgaatatgcagcatgattatgaagagcatgatta 5282
Query: 401 gaattgtacagcttattgtccatcaatagatcccgttcttctcgtattagatttttcggt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 gaattgtacagcttattgtccatcaatagatcccgttcttctcgtattagatttttcggt 5222
Query: 461 aaggcggaatgaatctcactactatcactgcttcccgttcggcctgtagaaccatattcg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 aaggcggaatgaatctcactactatcactgcttcccgttcggcctgtagaaccatattcg 5162
Query: 521 tgttgtaaagtacgagaattattggttgcgaaaagagaatcctctgaatcttcgctaata 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5161 tgttgtaaagtacgagaattattggttgcgaaaagagaatcctctgaatcttcgctaata 5102
Query: 581 tcgtcgtctataaatgcttgagtcttgtctcccgaaatataatcttgaggagagaaaaga 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5101 tcgtcgtctataaatgcttgagtcttgtctcccgaaatataatcttgaggagagaaaaga 5042
Query: 641 ccgcctttaccattattgttcgagtaaattatggaagatcttctctcctgggttgtatgc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 ccgcctttaccattattgttcgagtaaattatggaagatcttctctcctgggttgtatgc 4982
Query: 701 ttgaattgcttagacatttgattttgggtattaaaaaactagagaaaaagggggaaaact 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 ttgaattgcttagacatttgattttgggtattaaaaaactagagaaaaagggggaaaact 4922
Query: 761 cttctcaaggttgtactggtctctattcgnatgagagccaattaagttatgagattttag 820
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4921 cttctcaaggttgtactggtctctattcggatgagagccaattaagttatgagattttag 4862
Query: 821 cgattattagtaagtccaaagtagtttacttccctatgataaaccagag-tcaaatttaa 879
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct: 4861 cgattattagtaagtccaaagtagtttacttcactatgataaaccagagttcaaattaag 4802
Query: 880 gtggttcc 887
||||||||
Sbjct: 4801 gtggttcc 4794
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6463
Number of Sequences: 1807
Number of extensions: 6463
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)