BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB05FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1544 0.0
>3x_Contig1712
Length = 23668
Score = 1544 bits (779), Expect = 0.0
Identities = 822/834 (98%), Gaps = 2/834 (0%)
Strand = Plus / Minus
Query: 86 cagatgccttatgagattactcttaacattgaattttttgttgcagccttcccatgtgca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 cagatgccttatgagattactcttaacattgaattttttgttgcagccttcccatgtgca 5440
Query: 146 ttcgaaaggcttatcgccagaatgtaccaacatatgcgtacgcagagcgctaggtcttgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439 ttcgaaaggcttatcgccagaatgtaccaacatatgcgtacgcagagcgctaggtcttgt 5380
Query: 206 gaattgtttccttttttgtgcgcaaatatctgccttcccattagctttaccctttacaac 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5379 gaattgtttcccgcactgtgcgcaaatatctgccttcccattagctttaccctttacaac 5320
Query: 266 tgtggttggactattgtgatgacgttgagcgtagcttatatgttgttttccacttttttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5319 tgtggttggactattgtgatgacgttgagcgtagcttatatgttgttttccacttttttg 5260
Query: 326 ggaatgaggacgtgatcgattatcacatgtgttacgatgatgcagaggtggatgatagta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5259 ggaatgaggacgtgatcgattatcacatgtgttacgatgatgcagaggtggatgatagta 5200
Query: 386 cgagtttgtagatccaacggcaggccttatcatattattattcgtagcaactgtaattcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5199 cgagtttgtagatccaacggcaggccttatcatattattattcgtagcaactgtaattcc 5140
Query: 446 actttggctaagcatagaacttgtacctgtgggttgatgatagatttgaggagcaacatg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5139 actttggctaagcatagaacttgtacctgtgggttgatgatagatttgaggagcaacatg 5080
Query: 506 catcgaattagtgcccagggaatgaacatggccagctgaaattccattcatctcaagtcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5079 catcgaattagtgcccagggaatgaacatggccagctgaaattccattcatctcaagtcc 5020
Query: 566 cattcctgaaacgacattacttcccctccgaggtttgctttgagaaccgaatgacaagcc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5019 cattcctgaaacgacattacttcccctccgaggtttgctttgagaaccgaatgacaagcc 4960
Query: 626 atctaacgaggaagagctgctcaaagcgtaaacaacactgctgctgctgctgctgctgct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4959 atctaacgaggaagagctgctcaaagcgtaaacaacactgctgctgctgctgctgctgct 4900
Query: 686 actactactgctgctgtcgacattactttcaatggaaagacccgtagtggtatatctttg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4899 actactactgctgctgtcgacattactttcaatggaaagacccgtagtggtatatctttg 4840
Query: 746 tgatgagccagagtaacgttccggagagcttaattggttgaatttggagtaaggcaccga 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4839 tgatgagccagagtaacgttccggagagcttaattggttgaatttggagtaaggcaccga 4780
Query: 806 tgcattgggatatgtggttgcagtgagcatatatggatggatttgttggctgntgaagta 865
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 4779 tgcattgggatatgtggttgcagtgagcatatatggatggattgtttggctgttgaagta 4720
Query: 866 ttgccggtggt-acagcgttgatattgttggtaaaaacaaattagattgccttg 918
||| ||||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 4719 ttg-cggtggtaacagcgttgatattggtggtaaaaccaaattagattgccttg 4667
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6373
Number of Sequences: 1807
Number of extensions: 6373
Number of successful extensions: 390
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)