BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB05RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1635 0.0
>3x_Contig1718
Length = 19496
Score = 1635 bits (825), Expect = 0.0
Identities = 857/865 (99%), Gaps = 2/865 (0%)
Strand = Plus / Minus
Query: 49 gcttataagagatggcgattcaattgaagaaatgtcattatacagtacagataacgatgg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2278 gcttataagagatggcgattcaattgaagaaatgtcattatacagtacagataacgatgg 2219
Query: 109 aaatatgaagcgtaaggatgggaaagtagggatatacgatcatctcttggagagggaagc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2218 aaatatgaagcgtaaggatgggaaagtagggatatacgatcatctcttggagagggaagc 2159
Query: 169 aactttgaaacggaacagagcactatgtttaccagatccaagacctattacctacatacc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2158 aactttgaaacggaacagagcactatgtttaccagatccaagacctattacctacatacc 2099
Query: 229 gaaggggttttatctcagtcaaaacgatcatgtcatccgaaagaaacagaaacctgcaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2098 gaaggggttttatctcagtcaaaacgatcatgtcatccgaaagaaacagaaacctgcaag 2039
Query: 289 agattttatcttcgaaggaagtaacagcgatgagctgggaatctacgacgtgctattgaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2038 agattttatcttcgaaggaagtaacagcgatgagctgggaatctacgacgtgctattgaa 1979
Query: 349 aaaattcagcaaggacgaacaaatcaagcaatttcttcatgcattgcggaatggaagtgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1978 aaaattcagcaaggacgaacaaatcaagcaatttcttcatgcattgcggaatggaagtgt 1919
Query: 409 gataactggcgaggatgtatcaagaaggaaaactcttttcgtagaagatttcccaatctc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1918 gataactggcgaggatgtatcaagaaggaaaactcttttcgtagaagatttcccaatctc 1859
Query: 469 gattatattatctgtgttccgggaaattatagatcaatggcctctcactgaatacaagga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1858 gattatattatctgtgttccgggaaattatagatcaatggcctctcactgaatacaagga 1799
Query: 529 gaaatttgaaaaactaatgcaaatatacaatggattacaagctgatattaatgaacttca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1798 gaaatttgaaaaactaatgcaaatatacaatggattacaagctgatattaatgaacttca 1739
Query: 589 gaagaaagtagagatccaggagttagacttccaacacgaagcgttaccggaaaaaacgtc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1738 gaagaaagtagagatccaggagttagacttccaacacgaagcgttaccggaaaaaacgtc 1679
Query: 649 aatatcatctctcatcgataaagaggagaaagaaatacagaagctcgagaaacagttgga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 aatatcatctctcatcgataaagaggagaaagaaatacagaagctcgagaaacagttgga 1619
Query: 709 ccttttggaagggagaaataagtgaaatctagcagcggtactaaaaatccatttgataca 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 ccttttggaagggagaaataagtgaaatctagcagcggtactaaaaatccatttgataca 1559
Query: 769 ttaataagttatattcaagaaaaaccgatatgcttgccgaaatgaagtggaaagatatat 828
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1558 ttaataagttatatccaagaaaaaccgatatgcttgccgaaatgaagtggaaagatatat 1499
Query: 829 ttcacactccgggaattaatctcgcactggaatggaaatattcatgtaaaagttcatttc 888
|||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 1498 ttcacacttcgggaattaatctcgcactggaatggaaatattcatgt-aagtttcagttc 1440
Query: 889 aggatatatcattttttgtattatt 913
|| |||||||| |||||||||||||
Sbjct: 1439 agtatatatca-tttttgtattatt 1416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8452
Number of Sequences: 1807
Number of extensions: 8452
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)