BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB06RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1431 0.0
>3x_Contig1746
Length = 26672
Score = 1431 bits (722), Expect = 0.0
Identities = 841/870 (96%), Gaps = 8/870 (0%)
Strand = Plus / Minus
Query: 41 ctttgggatcctagtcaagaaactgcaggatagttctaactacaatacgactaatttggc 100
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 20365 ctttgggatcctagtcaagaaacgtcaggatagttctaactacgatacgactaatttggc 20306
Query: 101 tcctttggatcccaacggtccaatattttgggggaaaccacctggtagtggtatcttgga 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20305 tcctttggatcccaacggtccaatattttgggggaaaccacctggtagtggtatcttgga 20246
Query: 161 tggtgatttaaattcaaatgtcaatggaaatcacatccttagagaaaagtttgttattta 220
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 20245 tggtgatttaaattcaaatgtcaatggaaatcacatccttagagaaaagtttgagaaata 20186
Query: 221 tgccaaaattatttacaggtttaacaattcaagacaatcacataatgacgattttcaatt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20185 tgccaaaattatttacaggtttaacaattcaagacaatcacataatgacgattttcaatt 20126
Query: 281 aaccaaagagttcattgccatctttcagaatacgaccgactcgaagtatagacagctact 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20125 aaccaaagagttcattgccatctttcagaatacgaccgactcgaagtatagacagctact 20066
Query: 341 tgacggttgggagattatagataatgcaacaaatcaatccccaaatattgttgagttttc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20065 tgacggttgggagattatagataatgcaacaaatcaatccccaaatattgttgagttttc 20006
Query: 401 caaaaaatacctagaaaaccagttcttgagctatgttgacaatttgtattcaaagaatcc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20005 caaaaaatacctagaaaaccagttcttgagctatgttgacaatttgtattcaaagaatcc 19946
Query: 461 aagcgaaggtttaccgaccaatgttaacaaaattagagcatttattgacctcaaactgaa 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19945 aagcgaaggtttaccgaccaatgttaacaaaattagagcatttattgacctcaaactgaa 19886
Query: 521 gactggtgaaaatacttggaaatttaacaatcttacgattgtgaatggaattcccgtatg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19885 gactggtgaaaatacttggaaatttaacaatcttacgattgtgaatggaattcccgtatg 19826
Query: 581 ggccttgattttttatttgctaagggctggtttaccgcaggacgcgctagaagtagttgt 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19825 ggccttgattttttatttgctaagggctggtttaccgcaggacgcgctagaagtagttgt 19766
Query: 641 taacaacaaattgagtttcaaaaaagtggagcaatctttccttacatactttaaagctta 700
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 19765 taacaacaaattgagtttcaaaaaagtggagcaatctttcctaacatacttcaaagctta 19706
Query: 701 tgtaacgtctcctgatcatcgtcttccacaggaatttgtctc-aggttgcatacagaata 759
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 19705 tgtaacgtctcctgatcatcgtcttccacaggaatttgtctcaaggttgcatacagaata 19646
Query: 760 t-accagcat-tc-aaaacactttgg-cagcgatccgttccgtttggcgttcttacaaat 815
| |||||||| || |||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct: 19645 taaccagcatatcaaaaacactttggacagcgatccgttccgtttggcggtctacaaaat 19586
Query: 816 tattgccaaatgtgatttgacagggaag-atttcttttcta-tactcttagcgtggaaga 873
||||| || ||||||||||||| ||||| || ||| ||||| |||||| |||||||||||
Sbjct: 19585 tattggcagatgtgatttgacaaggaagaatatctcttctattactctaagcgtggaaga 19526
Query: 874 ttgtttatggatt-acttgaagttaatcaa 902
||| ||||||||| |||||| |||||||||
Sbjct: 19525 ttggttatggattcacttgatgttaatcaa 19496
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7699
Number of Sequences: 1807
Number of extensions: 7699
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)