BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB08RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig898 1628 0.0
>3x_Contig898
Length = 3394
Score = 1628 bits (821), Expect = 0.0
Identities = 876/892 (98%), Gaps = 2/892 (0%)
Strand = Plus / Minus
Query: 48 gcttgtctcggtcaatctgattctcncaatcgttcaatatcatcccacacccagaatgat 107
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 2634 gcttgtctcggtcaatctgattctccaaatcgttcaatatcatcccacaaacagaatgat 2575
Query: 108 gatacttgtattccgtttccaaacaggtcatcacgtttatgagtattgattcgagggctc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 gatacttgtattccgtttccaaacaggtcatcacgtttatgagtattgattcgagggctc 2515
Query: 168 tatgttcataattttcctggtatgagacagatttcccttggtaattgatattcttttgag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2514 tatgttcataattttcctggtatgagacagatttcccttggtaattgatattcctttgag 2455
Query: 228 atagttttgattccaagtcatacattaacacaccaagttttatggcggcgtcaggatttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2454 atagttttgattccaagtcatacattaacacaccaagttttatggcggcgtcaggatttg 2395
Query: 288 tagtatcaaacacgaaaactttatctttctgtatcattgcttttatatgtaacacattca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 tagtatcaaacacgaaaactttatctttctgtatcattgcttttatatgtaacacattca 2335
Query: 348 ccaaaatgcacttaggtttgatgacaaacgaaggtattacatctattgtactcgagtcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 ccaaaatgcacttaggtttgatgacaaacgaaggtattacatctattgtactcgagtcaa 2275
Query: 408 tcttcctcaaatctcttggatataacccatatttctgtaagaactcccatttcgggaatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2274 tcttcctcaaatctcttggatataacccatatttctgtaagaactcccatttcgggaatt 2215
Query: 468 tatgagatacagcagtcacgtcacctttctcgttgaaaatggtacatgatacgtaagatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2214 tatgagatacagcagtcacgtcacctttctcgttgaaaatggtacatgatacgtaagatt 2155
Query: 528 catgaggcgtcacaggtttcaccaagaaaggatgctgtgttgaagcgattggtttgatga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2154 catgaggcgtcacaggtttcaccaagaaaggatgctgtgttgaagcgattggtttgatga 2095
Query: 588 gttttgtcgtcgagttccatcgaagttgtgatcggacggctttagaagagtgtcgaagtt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2094 gttttgtcgtcgagttccatcgaagttgtgatcggacggctttagaagagtgtcgaagtt 2035
Query: 648 ggatttgaagcccttttccaaaacggaaatacataagagatagttatgtcagcttgatat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2034 ggatttgaagcccttttccaaaacggaaatacataagagatagttatgtcagcttgatat 1975
Query: 708 tctatgctaaagctcccagttgaacctcagttttcaagcggtattcttagatctatgctg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1974 tctatgctaaagctcccagttgaacctcagttttcaagcggtattcttagatctatgctg 1915
Query: 768 aacttttttgtttc-acagatacttgtgtgcaatgaaagtgtttgcacaattttgtcaat 826
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1914 aacttttttgtttcaacagatacttgtgtgcaatgaaagtgtttgcacaattttgtcaat 1855
Query: 827 atatagaaattagcgaacgtacattgcaaatagaaatcaaaggggcccagttgaactgca 886
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 1854 atatagaaattagcgaacgtacattgcaaatagaaatcaaagggccacaagtgaactgca 1795
Query: 887 acacggtaagacagccatatattcaatttaccttattctttcagcaccgtgt 938
|||||| ||||||||||||||| |||| |||| || |||| |||||||||||
Sbjct: 1794 acacggaaagacagccatatatccaatatacc-tagtcttccagcaccgtgt 1744
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6815
Number of Sequences: 1807
Number of extensions: 6815
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)