BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB09FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1554 0.0
>3x_Contig1744
Length = 24119
Score = 1554 bits (784), Expect = 0.0
Identities = 865/886 (97%), Gaps = 5/886 (0%)
Strand = Plus / Plus
Query: 86 taccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaataccggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15921 taccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaataccggc 15980
Query: 146 aacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttgggagaaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15981 aacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttgggagaaac 16040
Query: 206 tttcgccttattat-actatatagttctagttcacttggatgtacaccaagttcattggc 264
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16041 tttcgccttataatgaccatatagttctagttcacttggatgtacaccaagttcattggc 16100
Query: 265 aactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggcacttt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16101 aactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggcacttt 16160
Query: 325 tgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctctctttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16161 tgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctctctttg 16220
Query: 385 cctcttggcagccaaaagaacgttttgaaccaacatcgcaactgtcattggaccaactcc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16221 cctcttggcagccaaaagaacgttttgaaccaacatcgcaactgtcattggaccaactcc 16280
Query: 445 acctggtacaggtgtaatgtaagaagccttgtctttacacaactcaaagtcgacgtcacc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16281 acctggtacaggtgtaatgtaagaagccttgtctttacacaactcaaagtcgacgtcacc 16340
Query: 505 gaccaacttcctaccggattttttggatgcgtctgggacatagttaataccgacatcaat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16341 gaccaacttcctaccggattttttggatgcgtctgggacatagttaataccgacatcaat 16400
Query: 565 gacgatagcatcttgctttaaccagtttggtttgaccatgtttggcacaccacaagcagc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16401 gacgatagcatcttgctttaaccagtttggtttgaccatgtttggcacaccacaagcagc 16460
Query: 625 tatgactacatcggcattttntacaacatcggcaatgttctcagtgtatctatggcaaat 684
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 16461 tatgactacatcggcattttttacaacatcggcaatgttctcagtgtatctatggcaaat 16520
Query: 685 tgtgactgttgcatttaaatccttttacaatgatgcaacgggagttcccacaatgtcaga 744
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 16521 tgtgactgttgcatttaaatcctttaacaatgatgcaacgggagttcccacaatgtcaga 16580
Query: 745 tcttccaataacaacagcgcgcttctctttcaaattaataccagattcttttcacaatcg 804
||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||
Sbjct: 16581 tcttccaataacaacagcgcgcttccctctcaaatcaataccagattctttcaacaatcg 16640
Query: 805 gatacaaccgttaggggtacatggaatgaagtatggctta-cacctctctttgat-attc 862
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 16641 gatacaaccgttaggggtacatggaatgaagtatggcttaccacctctctttgataattc 16700
Query: 863 accaactttgaaacgatgnaatccgtccacattctttggttacgaaacagcgtttgttca 922
|||||| ||||||||||| |||||||| |||| |||| | |||||||||||||||| |||
Sbjct: 16701 accaacattgaaacgatggaatccgtcgacatccttttggtacgaaacagcgtttg-tca 16759
Query: 923 cttcagcctcattttaatgacgaggncaaaggtaattggatcaata 968
|||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 16760 cttcagcctcatttaaatgacgagg-caaaggtaattggatcaata 16804
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5480
Number of Sequences: 1807
Number of extensions: 5480
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)