BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB09RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1562 0.0
>3x_Contig1789
Length = 30977
Score = 1562 bits (788), Expect = 0.0
Identities = 878/899 (97%), Gaps = 7/899 (0%)
Strand = Plus / Plus
Query: 44 cttgtataaggagccaatctaatttcgga-gtggtttacgatatgttgactgctgccaga 102
|||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||
Sbjct: 28695 cttgtataaggagccaatctaaggacagaggtggtttacgatatgttgaatgctgccaga 28754
Query: 103 atgaactcatctcttttatttaaagctcatctccataatgtaacaacaagagccacaaga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28755 atgaactcatctcttttatttaaagctcatctccataatgtaacaacaagagccacaaga 28814
Query: 163 agactactttcacagagctgtaaactggggcagaagcatgtcagcagcaccgcatatgct 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 28815 agactactttcacagagctgtaaactggggcagaagcatgtcagcagcaccgcagatgct 28874
Query: 223 attgaagaacataataccatttctgaggtgatagaagatatcaaacagaaaaagaacccg 282
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 28875 attgaagaacataataccatttctgaggtgatagaagagatcaaacagaaaaagaacccg 28934
Query: 283 gataaagaggcgatgaacaggttattgaatccagtgtttttcaataaacagatcgtcttc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28935 gataaagaggcgatgaacaggttattgaatccagtgtttttcaataaacagatcgtcttc 28994
Query: 343 tctgataaatcaccatcatggacagggataatggagacggataaagattctgatagccag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28995 tctgataaatcaccatcatggacagggataatggagacggataaagattctgatagccag 29054
Query: 403 acaccgctaccccattccagtttcaggcttagtgatcatgatataagagatttaccaata 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055 acaccgctaccccattccagtttcaggcttagtgatcatgatataagagatttaccaata 29114
Query: 463 tcggcgaccagttatcaaaatgtgcgattatccggcatagagaaagccattcaactagtg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29115 tcggcgaccagttatcaaaatgtgcgattatccggcatagagaaagccattcaactagtg 29174
Query: 523 gcagaaaaagagaagttgagagtagcattggaacacgcactagccccacatttgaatcat 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29175 gcagaaaaagagaagttgagagtagcattggaacacgcactagccccacatttgaatcat 29234
Query: 583 ttaaagaagactgtgaccacagataaagagttgttggacacttgcatgcattacttggac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29235 ttaaagaagactgtgaccacagataaagagttgttggacacttgcatgcattacttggac 29294
Query: 643 caatacttgcaaagggatcccaagatggaggttcaaacgaaaaggttcatcgaagtgatc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29295 caatacttgcaaagggatcccaagatggaggttcaaacgaaaaggttcatcgaagtgatc 29354
Query: 703 cacaagagatcttgcgaggaaccatccaatttaccacaaccttatttaataacgttacct 762
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 29355 cacaagagatcttgcgaggaaccatccaatttaccacaaccttattcaataacgttacct 29414
Query: 763 gccatcatacggtacatatttgatagtggagagttcaaactacctgnnagatag-aacta 821
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 29415 gccatcatacggtacatatttgatagtggagagttcaaactacctg-gagatagaaacta 29473
Query: 822 ttttattttaaagacaatttacaataattgcaaaagttgtaaaaatctcggccttttact 881
| |||| |||||||||||||||||||| ||||||||||||||| ||||||||| |||||
Sbjct: 29474 tattatattaaagacaatttacaataaatgcaaaagttgtaaagatctcggcc-tttacc 29532
Query: 882 ttgacgtatgcaacatcgattttctac-acttgctaattaagtttatgttgggaagaat 939
||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct: 29533 ttgacgtatgcaacatcga-tttctacaacttgctaattaagtttatg-tgggaagaat 29589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7188
Number of Sequences: 1807
Number of extensions: 7188
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)