BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB10FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1460 1556 0.0
>3x_Contig1460
Length = 9157
Score = 1556 bits (785), Expect = 0.0
Identities = 848/866 (97%), Gaps = 3/866 (0%)
Strand = Plus / Plus
Query: 88 cagaacagatgctagtgatgagtttttcaagacattatttgcgcagttggaaggtgcagc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5996 cagaacagatgctagtgatgagtttttcaagacattatttgcgcagttggaaggtgcagc 6055
Query: 148 tccaatgaagagagaatttggttggggtgatattaaggctaaagagtgtgatatggggga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6056 tccaatgaagagagaatttggttggggtgatattaaggctaaagagtgtgatatggggga 6115
Query: 208 cgttggattctttttta-tggtcgtgatgagaggttaagttatgataatttggccaaatg 266
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6116 cgttggattcgattccaatggtcgtgatgagaggttaagttatgataatttggccaaatg 6175
Query: 267 tttgcaattacccgagagtaactataactctttgaagaatggccatgagaaatttgttaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6176 tttgcaattacccgagagtaactataactctttgaagaatggccatgagaaatttgttaa 6235
Query: 327 atacttgagtacagttgatacaagtgcaagtcagttggaacaaatctatgcaactaagag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6236 atacttgagtacagttgatacaagtgcaagtcagttggaacaaatctatgcaactaagag 6295
Query: 387 agggattgttaccgtgggtggacgtaggtactcattgctttcatatttgatgatcaatat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6296 agggattgttaccgtgggtggacgtaggtactcattgctttcatatttgatgatcaatat 6355
Query: 447 ggtgagaagaagtggcagtaaactaccgattgaagttgtcattcctccagatgacgaacc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6356 ggtgagaagaagtggcagtaaactaccgattgaagttgtcattcctccagatgacgaacc 6415
Query: 507 cgagaccgagttttgtgaatcgatcttgcaatttaacgctagatgtatttatttcaagga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6416 cgagaccgagttttgtgaatcgatcttgcaatttaacgctagatgtatttatttcaagga 6475
Query: 567 tagattaccaacctcgctattggcaaacttgagtgtgaaatcttatcaggtgaaaggtat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6476 tagattaccaacctcgctattggcaaacttgagtgtgaaatcttatcaggtgaaaggtat 6535
Query: 627 agccttgttactttcatcttttcaggaatttgtccttatcgattccgataacatgccatt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6536 agccttgttactttcatcttttcaggaatttgtccttatcgattccgataacatgccatt 6595
Query: 687 gaaaaacatcgatgaggtgttcgattataacgtattcagggatcatggtatggttatttg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 gaaaaacatcgatgaggtgttcgattataacgtattcagggatcatggtatggttatttg 6655
Query: 747 gccagatatttggagaagaatgacatcttcacaattctaccaattggcangagttccgat 806
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 6656 gccagatatttggagaagaatgacatctccacaattctaccaattggcagaggttccgat 6715
Query: 807 cgatttcactaaacgtgtgcgtaatgcangtgatgagttatctccagtatcttgttatga 866
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 6716 cgatttcactaaacgtgtgcgtaatgcaggtgatgagttatctccagtatctcgttatga 6775
Query: 867 ccagctag-aaacacagtaagtgaaaacaagcctanggtgccaatgcatgattttcttgg 925
| |||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||
Sbjct: 6776 caagctagaaaacacagtaagtgaaaacaaggctaaggtgccaatgcatgatttccttgg 6835
Query: 926 cactttaccggaccc-actacagagt 950
|||| |||||||||| ||||||||||
Sbjct: 6836 cactctaccggacccaactacagagt 6861
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6156
Number of Sequences: 1807
Number of extensions: 6156
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)