BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB10RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1297 1675 0.0
>3x_Contig1297
Length = 4767
Score = 1675 bits (845), Expect = 0.0
Identities = 869/877 (99%), Gaps = 1/877 (0%)
Strand = Plus / Minus
Query: 41 gcttgtcttcattccttgggtcttc-tgtttctgaaaggcaactatcacaaagcgtacag 99
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 3168 gcttgtcttcattccttgggtctacctgtttctgaaaggcaactatcacaaagcgtacag 3109
Query: 100 tctgaacctgttattaacggactaaatttcggtatgcttgggaagggaagttctaaaatg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3108 tctgaacctgttattaacggactaaatttcggtatgcttgggaagggaagttctaaaatg 3049
Query: 160 ttaatatccaaacagagtacggctgaatttttgcaaaggagaaacctagataaattagtg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3048 ttaatatccaaacagagtacggctgaatttttgcaaaggagaaacctagataaattagtg 2989
Query: 220 ttttggaacaaacgagacactcaaaaaagtcacaaatataacggtgagtataccgtgcta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2988 ttttggaacaaacgagacactcaaaaaagtcacaaatataacggtgagtataccgtgcta 2929
Query: 280 caaactgtgctaaattctgtggtcggcagtgtctatctattgcacggtcaagacaaggcc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2928 caaactgtgctaaattctgtggtcggcagtgtctatctattgcacggtcaagacaaggcc 2869
Query: 340 accgaatacgtgttgcatgaactattcagcgacaatagtgattccctaacgaagatatct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2868 accgaatacgtgttgcatgaactattcagcgacaatagtgattccctaacgaagatatct 2809
Query: 400 gaaagtttgttagcaaacagggatacgaccgagaagttataatattatgtctaattttac 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2808 gaaagtttgttagcaaacagggatacgaccgagaagttataatattatgtctaattttac 2749
Query: 460 acgacaggaaagaaagagaaatggaatacacaatagacttcgacatcaataaaaagcact 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2748 acgacaggaaagaaagagaaatggaatacacaatagacttcgacatcaataaaaagcact 2689
Query: 520 cgagtgaatggtctccatcggagttgggaaagagctttcaaaacttgtatatatatattt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2688 cgagtgaatggtctccatcggagttgggaaagagctttcaaaacttgtatatatatattt 2629
Query: 580 cgaaacggaagtttcaatcacagctcttggtcaatgtggtgttttaatctactctttcat 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2628 cgaaacggaagtttcaatcacagctcttggtcaatgtggtgttttaatctactctttcat 2569
Query: 640 ccctgctcaatttcaacgttttattataatgaatttaccaaaagcatgaaaagcataacc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2568 ccctgctcaatttcaacgttttattataatgaatttaccaaaagcatgaaaagcataacc 2509
Query: 700 ttttaacgacactccatcgtcacacttcaattaaaaatgaacctcgaaagaaacgcgcgc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508 ttttaacgacactccatcgtcacacttcaattaaaaatgaacctcgaaagaaacgcgcgc 2449
Query: 760 actgnatatatctcatgtatctctagaaatatagacgtacataaatttacaactaaatct 819
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 actgtatatatctcatgtatctctagaaatatagacgtacataaatttacaactaaatct 2389
Query: 820 atcattaattaaatgttaacatacaanataaaaacagattaagaaaagtccataatacan 879
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 2388 atcattaattaaatgttaacatacaaaataaaaacagattaagaaaagtacataatacaa 2329
Query: 880 tacatgtntattaatacatatataacttcatagaagg 916
||||||| ||| |||||||||||||||||||||||||
Sbjct: 2328 tacatgtatataaatacatatataacttcatagaagg 2292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9327
Number of Sequences: 1807
Number of extensions: 9327
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)