BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC16ZB11RM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig653                                                         1140   0.0  
3x_Contig1744                                                         214   2e-55

>3x_Contig653 
          Length = 2427

 Score = 1140 bits (575), Expect = 0.0
 Identities = 649/667 (97%), Gaps = 5/667 (0%)
 Strand = Plus / Minus

                                                                        
Query: 257  ggcctctttaccacgctggtataacttatctatctgttctttcgttagcggatcctgttc 316
            ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 ggcctctttcccccgctggtataacttatctatctgttctttcgttagcggatcctgttc 1904

                                                                        
Query: 317  tcttgttaattcagggtccaaaggaacttcgtaccacaacaaatctgatggaacaagtaa 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 tcttgttaattcagggtccaaaggaacttcgtaccacaacaaatctgatggaacaagtaa 1844

                                                                        
Query: 377  tttatcactttgaacaatatgagtttgagtgatcatgtcggattgatcttcctttttttt 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 tttatcactttgaacaatatgagtttgagtgatcatgtcggattgatcttcctttttttt 1784

                                                                        
Query: 437  ttctgctggtttaggactaagtggttcctcctctttctctaccgtctcttcttcttcttc 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 ttctgctggtttaggactaagtggttcctcctctttctctaccgtctcttcttcttcttc 1724

                                                                        
Query: 497  ttcttcaacttctacctcctcctcttcaatatctttctcttctttgcctgcatcctcagt 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 ttcttcaacttctacctcctcctcttcaatatctttctcttctttgcctgcatcctcagt 1664

                                                                        
Query: 557  aactgttggttcttctacaacttcaggttcaggtagtttatcgaatcccatattcttcaa 616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 aactgttggttcttctacaacttcaggttcaggtagtttatcgaatcccatattcttcaa 1604

                                                                        
Query: 617  taaagcactgaaatcgctcttaaactcgtcatcaacttcttcatcggcttcattgaattc 676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 taaagcactgaaatcgctcttaaactcgtcatcaacttcttcatcggcttcattgaattc 1544

                                                                        
Query: 677  aatctcactggcatcgtcgtcaacaccatcaacaagctggacatctttttcagaggctcc 736
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 aatctcactggcatcgtcgtcaacaccatcaacaagctggacatctttttcagaggctcc 1484

                                                                        
Query: 737  aagagacagagcttcacggatcaattctttattggtgacagcagtttcctctttagcttg 796
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 1483 aagagacagagcttcacggatcaattcttcattggtgacagcagtttcctctttagc-tg 1425

                                                                        
Query: 797  gagt-acgtctgtctctttttcgccctgcttcttactctttttaagcttaggggctttgg 855
            |||| ||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||
Sbjct: 1424 gagtaacgtctgtctctttttcgccctgcttcttactcttcttaggcttagtgtctttgg 1365

                                                                        
Query: 856  ccctggaagctccc-atttggaggacacttt-ttcttcatttggaataaat-aagactca 912
            || | ||||||||| |||||||||||||||| | ||||| || | |||||| ||||||||
Sbjct: 1364 cctttgaagctcccaatttggaggacactttctccttcaatttggataaatcaagactca 1305

                   
Query: 913  ttccaga 919
            |||||||
Sbjct: 1304 ttccaga 1298


>3x_Contig1744 
          Length = 24119

 Score =  214 bits (108), Expect = 2e-55
 Identities = 130/136 (95%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                         
Query: 44    gcttgtaatgcggaatttcttgatttcgttcccgcaaaaggatataaaagcactaagaga 103
             ||||||||||||||||||||||| ||| ||||||||||||||||| |||| |  ||||||
Sbjct: 23985 gcttgtaatgcggaatttcttgacttc-ttcccgcaaaaggatatcaaagaatcaagaga 24043

                                                                         
Query: 104   tttgatattatgcaatggagattcctgtagcaataaagtcaaagcactaattttatcgtt 163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24044 tttgatattatgcaatggagattcctgtagcaataaagtcaaagcactaattttatcgtt 24103

                             
Query: 164   caacgtaccatcgctt 179
             ||||||||||||||||
Sbjct: 24104 caacgtaccatcgctt 24119


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,433
Number of Sequences: 1807
Number of extensions: 11433
Number of successful extensions: 490
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)