BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC16ZB11RM1.SCF screened BAC_end (935 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig653 1140 0.0 3x_Contig1744 214 2e-55 >3x_Contig653 Length = 2427 Score = 1140 bits (575), Expect = 0.0 Identities = 649/667 (97%), Gaps = 5/667 (0%) Strand = Plus / Minus Query: 257 ggcctctttaccacgctggtataacttatctatctgttctttcgttagcggatcctgttc 316 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1963 ggcctctttcccccgctggtataacttatctatctgttctttcgttagcggatcctgttc 1904 Query: 317 tcttgttaattcagggtccaaaggaacttcgtaccacaacaaatctgatggaacaagtaa 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1903 tcttgttaattcagggtccaaaggaacttcgtaccacaacaaatctgatggaacaagtaa 1844 Query: 377 tttatcactttgaacaatatgagtttgagtgatcatgtcggattgatcttcctttttttt 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1843 tttatcactttgaacaatatgagtttgagtgatcatgtcggattgatcttcctttttttt 1784 Query: 437 ttctgctggtttaggactaagtggttcctcctctttctctaccgtctcttcttcttcttc 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1783 ttctgctggtttaggactaagtggttcctcctctttctctaccgtctcttcttcttcttc 1724 Query: 497 ttcttcaacttctacctcctcctcttcaatatctttctcttctttgcctgcatcctcagt 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1723 ttcttcaacttctacctcctcctcttcaatatctttctcttctttgcctgcatcctcagt 1664 Query: 557 aactgttggttcttctacaacttcaggttcaggtagtttatcgaatcccatattcttcaa 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1663 aactgttggttcttctacaacttcaggttcaggtagtttatcgaatcccatattcttcaa 1604 Query: 617 taaagcactgaaatcgctcttaaactcgtcatcaacttcttcatcggcttcattgaattc 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1603 taaagcactgaaatcgctcttaaactcgtcatcaacttcttcatcggcttcattgaattc 1544 Query: 677 aatctcactggcatcgtcgtcaacaccatcaacaagctggacatctttttcagaggctcc 736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1543 aatctcactggcatcgtcgtcaacaccatcaacaagctggacatctttttcagaggctcc 1484 Query: 737 aagagacagagcttcacggatcaattctttattggtgacagcagtttcctctttagcttg 796 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct: 1483 aagagacagagcttcacggatcaattcttcattggtgacagcagtttcctctttagc-tg 1425 Query: 797 gagt-acgtctgtctctttttcgccctgcttcttactctttttaagcttaggggctttgg 855 |||| ||||||||||||||||||||||||||||||||||| ||| |||||| | |||||| Sbjct: 1424 gagtaacgtctgtctctttttcgccctgcttcttactcttcttaggcttagtgtctttgg 1365 Query: 856 ccctggaagctccc-atttggaggacacttt-ttcttcatttggaataaat-aagactca 912 || | ||||||||| |||||||||||||||| | ||||| || | |||||| |||||||| Sbjct: 1364 cctttgaagctcccaatttggaggacactttctccttcaatttggataaatcaagactca 1305 Query: 913 ttccaga 919 ||||||| Sbjct: 1304 ttccaga 1298 >3x_Contig1744 Length = 24119 Score = 214 bits (108), Expect = 2e-55 Identities = 130/136 (95%), Gaps = 1/136 (0%) Strand = Plus / Plus Query: 44 gcttgtaatgcggaatttcttgatttcgttcccgcaaaaggatataaaagcactaagaga 103 ||||||||||||||||||||||| ||| ||||||||||||||||| |||| | |||||| Sbjct: 23985 gcttgtaatgcggaatttcttgacttc-ttcccgcaaaaggatatcaaagaatcaagaga 24043 Query: 104 tttgatattatgcaatggagattcctgtagcaataaagtcaaagcactaattttatcgtt 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24044 tttgatattatgcaatggagattcctgtagcaataaagtcaaagcactaattttatcgtt 24103 Query: 164 caacgtaccatcgctt 179 |||||||||||||||| Sbjct: 24104 caacgtaccatcgctt 24119 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,433 Number of Sequences: 1807 Number of extensions: 11433 Number of successful extensions: 490 Number of sequences better than 1.0e-20: 2 length of query: 935 length of database: 10,358,551 effective HSP length: 16 effective length of query: 919 effective length of database: 10,329,639 effective search space: 9492938241 effective search space used: 9492938241 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)