BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC16ZB12RM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1631 496 e-140
>3x_Contig1631
Length = 12284
Score = 496 bits (250), Expect = e-140
Identities = 323/341 (94%), Gaps = 5/341 (1%)
Strand = Plus / Minus
Query: 44 cttgacgtgccatatcgnaggggattgtcctcattatcttcttaaacatcattcgaattt 103
||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||
Sbjct: 2924 cttgacgtgccatatcgtaggt-attttcctcattatcttcttctacatcattcgaattt 2866
Query: 104 tgccattcgattgcttggtcatcatcgatggaaacttcagtcatcatgacaagggtatca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2865 tgccattcgattgcttggtcatcatcgatggaaacttcagtcatcatgacaagggtatca 2806
Query: 164 agtaccactgattgggcgtaattttgattatttttacacatctgaggggcgcattttctg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2805 agtaccactgattgggcgtaattttgattatttttacacatctgaggggcgcattcactg 2746
Query: 224 aagacagttaacaactccaaagcagtcgttctggcactcttttcttaatctttattcttg 283
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 2745 aagacagttaacaactccaaagcagtcgttctggcactcggttctaaatctttattcttg 2686
Query: 284 atgacncatatctgcaaattggataattttgatcgaacatatctttgaagagtttaggag 343
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2685 atgac-catatctgcaaattggataa-tttgatcgaacatatctttgaagagtttaggag 2628
Query: 344 ccaacctcacctaattccgatcaatgatttgaattcggcgg 384
|||| |||| |||||| |||||||||||| |||| ||||||
Sbjct: 2627 ccaa-ctcaactaatt-cgatcaatgattcgaatacggcgg 2589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,228
Number of Sequences: 1807
Number of extensions: 44228
Number of successful extensions: 2540
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)